Gene assembly is an important step in functional analysis of shotgun metagenomic data. Nonetheless, strain aware assembly remains a challenging task, as current assembly tools often fail to distinguish among strain variants or require closely related reference genomes of the studied species to be available
BackgroundMetagenomics allows unprecedented access to uncultured environmental microorganisms. The a...
In an effort to evaluate methods used to analyse metagenomes, we constructed three synthetic metagen...
Metagenomic investigations hold great promise for informing the genetics, physiology, and ecology of...
textabstractMotivation: Gene assembly is an important step in functional analysis of shotgun metagen...
Gene assembly is an important step in functional analysis of shotgun metagenomic data. Nonetheless, ...
Kang X, Luo X, Schönhuth A. StrainXpress: strain aware metagenome assembly from short reads. Nuclei...
We introduce STrain Resolution ON assembly Graphs (STRONG), which identifies strains de novo, from m...
Abstract We introduce STrain Resolution ON assembly Graphs (STRONG), which identifies strains de nov...
Metagenome data sets present a qualitatively different assembly problem than traditional single-orga...
The goal of strain-aware genome assembly is to reconstruct all individual haplotypes from a mixed sa...
We introduce STrain Resolution ON assembly Graphs (STRONG), which identifies strains de novo, from m...
Existing long-read de novo assembly methods can partially, but not completely, separate strains. Her...
Shotgun metagenomics has greatly advanced our understanding of microbial communities over the last d...
Luo X, Kang X, Schönhuth A. Enhancing Long-Read-Based Strain-Aware Metagenome Assembly. Frontiers i...
A shotgun dataset was simulated with the 454sim v1.04 package (Lysholm et al., 2011) using default s...
BackgroundMetagenomics allows unprecedented access to uncultured environmental microorganisms. The a...
In an effort to evaluate methods used to analyse metagenomes, we constructed three synthetic metagen...
Metagenomic investigations hold great promise for informing the genetics, physiology, and ecology of...
textabstractMotivation: Gene assembly is an important step in functional analysis of shotgun metagen...
Gene assembly is an important step in functional analysis of shotgun metagenomic data. Nonetheless, ...
Kang X, Luo X, Schönhuth A. StrainXpress: strain aware metagenome assembly from short reads. Nuclei...
We introduce STrain Resolution ON assembly Graphs (STRONG), which identifies strains de novo, from m...
Abstract We introduce STrain Resolution ON assembly Graphs (STRONG), which identifies strains de nov...
Metagenome data sets present a qualitatively different assembly problem than traditional single-orga...
The goal of strain-aware genome assembly is to reconstruct all individual haplotypes from a mixed sa...
We introduce STrain Resolution ON assembly Graphs (STRONG), which identifies strains de novo, from m...
Existing long-read de novo assembly methods can partially, but not completely, separate strains. Her...
Shotgun metagenomics has greatly advanced our understanding of microbial communities over the last d...
Luo X, Kang X, Schönhuth A. Enhancing Long-Read-Based Strain-Aware Metagenome Assembly. Frontiers i...
A shotgun dataset was simulated with the 454sim v1.04 package (Lysholm et al., 2011) using default s...
BackgroundMetagenomics allows unprecedented access to uncultured environmental microorganisms. The a...
In an effort to evaluate methods used to analyse metagenomes, we constructed three synthetic metagen...
Metagenomic investigations hold great promise for informing the genetics, physiology, and ecology of...
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