S1_VarData

Compiled table of evolved variants used to produce Figure 1. Columns refer to sample number (sample_number), whether the clone had evolved in a population with or without the plasmid (plasmid_trt, pQBR57 = plasmid-containing, plasmid- = plasmid free), with or without the other species (cul, ss = single-species, co=co-culture), the level of mercury treatment (mer, in µg/g), replicate (rep), species (spc, Pf = P. fluorescens, Pp = P. putida), whether the clone was carrying a plasmid (plasmid, P = plasmid+, T = contained Tn5042 but not the plasmid, 0 = contained neither plasmid nor Tn5042), the chromosome in which the variant was detected (chr, numbers are as the EMBL database with AM181176 referring to the P. fluorescens SBW25 chromosome, AE015451 to the P. putida KT2440 chromosome and LN713926 referring to pQBR57), the position of the variant (position and position.1, where the variant is a SNV/indel these numbers are identical and refer to the first base in question, where the variant is a TE insertion these numbers refer to the boundaries of the direct repeat caused on insertion, where the variant is a duplication or deletion these numbers refer to the start and end of the event respectively), the target gene (target, where the target it intergenic the upstream and downstream genes are given, separated by a dash), the type of mutation (type, either SNV/indel, or, if a TE insertion, the name of the TE), and the predicted effect of the mutation (effect, as determined by snpEff)