This is the output of the populations.pl script from the Stacks pipeline, used to filter SNPs scored in at least 75% of samples (parameter -r 0.75). This yielded a total of 1,337 SNPs. The original file name was "batch.8.catalog.snps.tsv". More information on the file format can be found at http://catchenlab.life.illinois.edu/stacks/comp/populations.php. We compressed the file for convenience
SNP data files for principal components analyses and summary statistics for pi output from Stacks pi...
VCF file containing the filtered SNPs called from the STACKs pipeline used in the population genomic...
CSV file with counts of reads supporting each allele at each SNP position and in each populatio
This is the output of the populations.pl script from the Stacks pipeline, used to filter SNPs scored...
This was an output of the populations.pl script from the Stacks pipeline, used to filter SNPs scored...
VCF file containing 13,113 "population-level filtered" SNPs for Eucalyptus microcarpa samples exclud...
Genepop formatted file that contains information for 20,712 SNPs generated using Stacks with a ddRAD...
parameters set -m 8 –N 2 –M 4 –n 3 -t. A filtered version of this dataset was used in analysis in pa...
Complete dataset for the filtered 27,298 SNPs obtained with the 72k Eucalyptus Axiom Array for the 4...
Text file (genepop input format) containing the genotypes used for population genomics analysis. The...
This is the easier to visualize data output (tsv format) from the STACKs assembly described in the p...
13,912 SNPs called in 50% of 69 individuals with no less than 95% missing data, minimum stack depth ...
Extracts STACKS that contain SNPs fixed between two groups, where at least a certain number of popul...
Genepop formatted file for 1587 SNPs for redpolls and two outgroup (Loxia) individuals. SNPs were as...
<p>SNPs from eight fragments of sp1, sp 2 and sp3 were compared by SNPer. Each computational SNPs co...
SNP data files for principal components analyses and summary statistics for pi output from Stacks pi...
VCF file containing the filtered SNPs called from the STACKs pipeline used in the population genomic...
CSV file with counts of reads supporting each allele at each SNP position and in each populatio
This is the output of the populations.pl script from the Stacks pipeline, used to filter SNPs scored...
This was an output of the populations.pl script from the Stacks pipeline, used to filter SNPs scored...
VCF file containing 13,113 "population-level filtered" SNPs for Eucalyptus microcarpa samples exclud...
Genepop formatted file that contains information for 20,712 SNPs generated using Stacks with a ddRAD...
parameters set -m 8 –N 2 –M 4 –n 3 -t. A filtered version of this dataset was used in analysis in pa...
Complete dataset for the filtered 27,298 SNPs obtained with the 72k Eucalyptus Axiom Array for the 4...
Text file (genepop input format) containing the genotypes used for population genomics analysis. The...
This is the easier to visualize data output (tsv format) from the STACKs assembly described in the p...
13,912 SNPs called in 50% of 69 individuals with no less than 95% missing data, minimum stack depth ...
Extracts STACKS that contain SNPs fixed between two groups, where at least a certain number of popul...
Genepop formatted file for 1587 SNPs for redpolls and two outgroup (Loxia) individuals. SNPs were as...
<p>SNPs from eight fragments of sp1, sp 2 and sp3 were compared by SNPer. Each computational SNPs co...
SNP data files for principal components analyses and summary statistics for pi output from Stacks pi...
VCF file containing the filtered SNPs called from the STACKs pipeline used in the population genomic...
CSV file with counts of reads supporting each allele at each SNP position and in each populatio
DOI
Add to ORKG