This is the easier to visualize data output (tsv format) from the STACKs assembly described in the paper. It contains all retained "stacks" including those that contain SNPs and those that have a single consensus sequence. Note that stacks with 4 or more SNPs were not used in the analyses. For more information, please contact nathanieldchu@gmail.co
We include the vcf files used for the different analysis and a file with individuals information:PIN...
Concatenated RAD loci for phrynosomatid lizards in phylip format for analyses in RAxML. Includes the...
This is a tab-delimited text file containing the nuclear marker genotypes at 9 microsatellite marker...
This is the easier to visualize data output (tsv format) from the STACKs assembly described in the p...
This file contains the depths of reads in the RAD-tag assembly corresponding to the RAD-tag SNP data...
This was an output of the populations.pl script from the Stacks pipeline, used to filter SNPs scored...
Stacks1.04 populations output provides summary statistics for each locus containing SNPs. To identif...
Data are 74,955 SNPs from 94 populations of Eurycea. For populations represented by more than one sa...
We present the allelic frequencies of all SNPs and natural populations. We provide information on t...
This is the output of the populations.pl script from the Stacks pipeline, used to filter SNPs scored...
This is a Phylip file alignment (not interleaved) of RAD-seq assembled data from pooled DNA samples ...
GSD_RAD_SNPs contains SNP data, formatted as codominant nucleotide genotypes (e.g. "AT", "CC" etc.) ...
This text file is a combination of the barcodes file and the "population map" file for the program s...
Raw genotype data for all identified catalog entries. Each line gives genotypes for a single catalog...
This file contains the 19,098, 200bp RAD-tags that were produced. For each RAD-tag, the variable nu...
We include the vcf files used for the different analysis and a file with individuals information:PIN...
Concatenated RAD loci for phrynosomatid lizards in phylip format for analyses in RAxML. Includes the...
This is a tab-delimited text file containing the nuclear marker genotypes at 9 microsatellite marker...
This is the easier to visualize data output (tsv format) from the STACKs assembly described in the p...
This file contains the depths of reads in the RAD-tag assembly corresponding to the RAD-tag SNP data...
This was an output of the populations.pl script from the Stacks pipeline, used to filter SNPs scored...
Stacks1.04 populations output provides summary statistics for each locus containing SNPs. To identif...
Data are 74,955 SNPs from 94 populations of Eurycea. For populations represented by more than one sa...
We present the allelic frequencies of all SNPs and natural populations. We provide information on t...
This is the output of the populations.pl script from the Stacks pipeline, used to filter SNPs scored...
This is a Phylip file alignment (not interleaved) of RAD-seq assembled data from pooled DNA samples ...
GSD_RAD_SNPs contains SNP data, formatted as codominant nucleotide genotypes (e.g. "AT", "CC" etc.) ...
This text file is a combination of the barcodes file and the "population map" file for the program s...
Raw genotype data for all identified catalog entries. Each line gives genotypes for a single catalog...
This file contains the 19,098, 200bp RAD-tags that were produced. For each RAD-tag, the variable nu...
We include the vcf files used for the different analysis and a file with individuals information:PIN...
Concatenated RAD loci for phrynosomatid lizards in phylip format for analyses in RAxML. Includes the...
This is a tab-delimited text file containing the nuclear marker genotypes at 9 microsatellite marker...