Supplemental Dataset 2. Sequences of all transcripts of Dodder_final_transcriptome in FASTA format, obtained after filtering and clustering of transcripts from Dodder_all_transcriptome.fa as described in materials and methods. The FASTA file can be downloaded at http://de.iplantcollaborative.org/dl/a85e3682-4315-43e8-9f9d-597908616b4a. The Trinity identifiers and length of each transcript are included in header description
This file holds all transcript assemblies generated through the trinity package (version 2012-01-25)...
Supplemental Dataset 6. GO-ids for all annotated dodder transcripts: all GO-ids (sheet1) and GO-slim...
The dataset contains the unigenes from the longest contigs per transcripts generated by Trinity. The...
Supplemental Dataset 2. Sequences of all transcripts of Dodder_final_transcriptome in FASTA format, ...
Supplemental Dataset 1. Sequences of all transcripts of Dodder_all_transcriptome in FASTA format. T...
Supplemental Dataset 3. Sequences of all predicted ORFs in FASTA format from Dodder_final_transcript...
Supplemental Dataset 4. Combined annotation of dodder transcripts obtained from BLASTX against nr an...
Supplemental Figure S1. Flow-chart showing steps in dodder transcriptome assembly and annotation, an...
Fasta files from five transcriptomes assembled for validating the original reference transcriptome
This archive contains supplementary data for the Delhomme et al, 2015 manuscript. It contains two di...
Supplemental Dataset 13. GO terms enriched for shared transcripts upregulated or downregulated for e...
These are the original transcriptome assembly files prior to the filtering and ORF prediction descri...
Transcript sequences for newly annotated genomes in FASTA format. One file per species
Supplemental Dataset 10. Differentially expressed transcripts (logFC " 1; FDR < 0.05) for each pair-...
Supplemental Dataset 8. Normalized RSEM-estimated counts for all replicates of each dodder tissue us...
This file holds all transcript assemblies generated through the trinity package (version 2012-01-25)...
Supplemental Dataset 6. GO-ids for all annotated dodder transcripts: all GO-ids (sheet1) and GO-slim...
The dataset contains the unigenes from the longest contigs per transcripts generated by Trinity. The...
Supplemental Dataset 2. Sequences of all transcripts of Dodder_final_transcriptome in FASTA format, ...
Supplemental Dataset 1. Sequences of all transcripts of Dodder_all_transcriptome in FASTA format. T...
Supplemental Dataset 3. Sequences of all predicted ORFs in FASTA format from Dodder_final_transcript...
Supplemental Dataset 4. Combined annotation of dodder transcripts obtained from BLASTX against nr an...
Supplemental Figure S1. Flow-chart showing steps in dodder transcriptome assembly and annotation, an...
Fasta files from five transcriptomes assembled for validating the original reference transcriptome
This archive contains supplementary data for the Delhomme et al, 2015 manuscript. It contains two di...
Supplemental Dataset 13. GO terms enriched for shared transcripts upregulated or downregulated for e...
These are the original transcriptome assembly files prior to the filtering and ORF prediction descri...
Transcript sequences for newly annotated genomes in FASTA format. One file per species
Supplemental Dataset 10. Differentially expressed transcripts (logFC " 1; FDR < 0.05) for each pair-...
Supplemental Dataset 8. Normalized RSEM-estimated counts for all replicates of each dodder tissue us...
This file holds all transcript assemblies generated through the trinity package (version 2012-01-25)...
Supplemental Dataset 6. GO-ids for all annotated dodder transcripts: all GO-ids (sheet1) and GO-slim...
The dataset contains the unigenes from the longest contigs per transcripts generated by Trinity. The...