This archive contains supplementary data for the Delhomme et al, 2015 manuscript. It contains two directories annotation and fasta. The annotation directory contains the metadata resulting from several analysis conducted on the transcriptome assembly. The fasta directory contains the transcriptome assembly and several different subsets of it. The description of the methods used to generate: 1) the different fasta sets that can be found in the fasta directory 2) the metadata summarized in the annotation tsv file can be found in the manuscript method section
There are three fasta files for the 30 museum samples. Two fasta files for non-continuous ND2 parti...
De novo genome assembly and annotation of Syzygium aqueum. The following files are available: sa...
fasta file containing reference transcriptome (16312 contigs) described in the method section
Fasta files from five transcriptomes assembled for validating the original reference transcriptome
Supplemental Dataset 2. Sequences of all transcripts of Dodder_final_transcriptome in FASTA format, ...
These are the original transcriptome assembly files prior to the filtering and ORF prediction descri...
The folder contains the fasta files used to generate the ML phylogenies, the tree files generated, t...
This file contains the transcriptome as a .fasta file and associated annotation tables for isogroups...
The FASTA file consists of the annotated reference transcriptome cDNA sequences used to map sample r...
De novo genome assembly and annotation of Syzygium malaccense. The following files are available: ...
A second transcriptome is included named, “Pleucopus_Transcriptome_Contigs_Annotated.fasta”. This f...
Transcript sequences for newly annotated genomes in FASTA format. One file per species
Metadata.txt:Information about sample collection source and sequencing data. FASTA files: Individual...
Set of .fna (fasta nucleic acid) format genome files used in this manuscript.</p
De novo genome assembly and annotation of Syzygium syzygioides. The following files are available: ...
There are three fasta files for the 30 museum samples. Two fasta files for non-continuous ND2 parti...
De novo genome assembly and annotation of Syzygium aqueum. The following files are available: sa...
fasta file containing reference transcriptome (16312 contigs) described in the method section
Fasta files from five transcriptomes assembled for validating the original reference transcriptome
Supplemental Dataset 2. Sequences of all transcripts of Dodder_final_transcriptome in FASTA format, ...
These are the original transcriptome assembly files prior to the filtering and ORF prediction descri...
The folder contains the fasta files used to generate the ML phylogenies, the tree files generated, t...
This file contains the transcriptome as a .fasta file and associated annotation tables for isogroups...
The FASTA file consists of the annotated reference transcriptome cDNA sequences used to map sample r...
De novo genome assembly and annotation of Syzygium malaccense. The following files are available: ...
A second transcriptome is included named, “Pleucopus_Transcriptome_Contigs_Annotated.fasta”. This f...
Transcript sequences for newly annotated genomes in FASTA format. One file per species
Metadata.txt:Information about sample collection source and sequencing data. FASTA files: Individual...
Set of .fna (fasta nucleic acid) format genome files used in this manuscript.</p
De novo genome assembly and annotation of Syzygium syzygioides. The following files are available: ...
There are three fasta files for the 30 museum samples. Two fasta files for non-continuous ND2 parti...
De novo genome assembly and annotation of Syzygium aqueum. The following files are available: sa...
fasta file containing reference transcriptome (16312 contigs) described in the method section