Electrophoretic and morphological variability among walleyes collected from three upper Missouri River tributaries and a glacial lake in South Dakota was investigated, and an upper Mississippi River stock was electrophoretically compared to the South Dakota stocks. Allele frequencies of two (MDH-3, GMP-3) of the twenty-one loci examined differed significantly (P\u3c0. 05) between South Dakota and Mississippi River walleyes. Contingency chi-square tests of allele frequencies showed homogeneity among walleyes from the Missouri River tributaries, and significant (P\u3c0.001) heterogeneity (P\u3c0.001) at the GMP-3 locus between Missouri River and glacial lake stocks. A dendogram derived from Nei unbiased genetic identity values produced separa...