Additional file 5: of Comprehensive gene expression profiling identifies distinct and overlapping transcriptional profiles in non-specific interstitial pneumonia and idiopathic pulmonary fibrosis

Figure S4. Ingenuity network analysis, networks with highest scores. Networks were scored based on the number of network eligible molecules they contained. Network eligible molecules with relatively increased expression are shown in red, whereas molecules with relatively reduced expression are shown in green. The intensity of the color is proportional to the fold change. Non-colored nodes represent genes added by Ingenuity pathway analysis based on its network algorithm but not upregulated in the actual microarray data. A. Network “Connective tissue disease, organismal injury and abnormality, cancer” (score = 29). Network eligible molecules with relatively increased expression in the IPF group are shown in red, whereas molecules with relatively increased expression in the NSIP group are shown in green. B. Network “Anti-microbial response, inflammatory response and cancer” (score = 42). Network eligible molecules with relatively increased expression I the NSIP group are shown in red. (JPG 53 kb