Additional file 3: of Comprehensive gene expression profiling identifies distinct and overlapping transcriptional profiles in non-specific interstitial pneumonia and idiopathic pulmonary fibrosis

Table S1. Top 25 upregulated genes in IPF vs. control (SAM analysis). Table S2. IPF vs. control, Ingenuity Pathway Analysis (IPA). In IPA, “functions” are divided in 3 categories: “disease and disorders”, “molecular and cellular functions” and “physiological system development and function”. Table S3. Top 25 upregulated genes in NSIP vs. control (SAM analysis). Table S4. NSIP vs. control, Ingenuity Pathway Analysis (IPA). In IPA, “functions” are divided in 3 categories: “disease and disorders”, “molecular and cellular functions” and “physiological system development and function”. Table S5. Gene expression of cellular senescence biomarkers in IPF vs. NSIP and vs. normal controls. Significantly upregulated genes are indicated with *. Pro- and anti-fibrotic properties of metalloproteinases (MMPs) are indicated in brackets under the gene name. Table S6. Summary of immunohistochemistry findings in IPF and NSIP. Table S7. Receiver operating characteristic (ROC) analysis of serum biomarkers vs. 12-month clinical progression. (DOCX 47 kb