Reorganized AlzPathway. This file contains a CellDesigner format of the reorganized AlzPathway, with a number of elements duplicated and rearranged to reduce their Euclidean distance while increasing their network distance. Original AlzPathway was published in [12], under the CC BY 3.0 license. See also alzpathway.org for details. (ZIP 261 KB
Constructed tissue-specific protein interaction networks in 16 tissues. (XLSX 7067 kb
motif_graphs.cys. Cytoscape file of the ENCODE-motif dataset graph and its clustered graphs as descr...
The 26 pairs of drugs which occur together in Drug Clustering Tier 1. These drug pairs occur togethe...
Complete enrichment results. This file contains a table with numbers of enriched terms for all teste...
Bi-level clustering examples. This file contains a figure with selected examples of bi-level cluster...
Complete F-measure results. This file contains a table with F-measure values for all tested clusteri...
Comparison of GO distance functions. This file contains figures comparing F-measure and the number o...
IPN. The IPN derived from the four different PPINs of four species is shown. They include human, wor...
Table S1. Performance comparison on known protein complexes using ClusterONE. Table S2. Performance ...
Some details regarding the five clustering algorithm algorithms (MCL, RNSC, CR, LD and GAPPI) are de...
Optimal number of clusters. The suitable number of clusters for hierarchical clustering method was c...
Figure S1. detailing manual curation protocol and Table S1. providing MeSH term pairings. (DOCX 27 k...
Clusters silhouette plots. Each color represents a cluster and each bar with specific color indicate...
Clustering properties results. These properties include connectivity, Dunn and Silhouette scores. Th...
Network Parameters. Some network parameter are included to gain clear insight about four PPINs and I...
Constructed tissue-specific protein interaction networks in 16 tissues. (XLSX 7067 kb
motif_graphs.cys. Cytoscape file of the ENCODE-motif dataset graph and its clustered graphs as descr...
The 26 pairs of drugs which occur together in Drug Clustering Tier 1. These drug pairs occur togethe...
Complete enrichment results. This file contains a table with numbers of enriched terms for all teste...
Bi-level clustering examples. This file contains a figure with selected examples of bi-level cluster...
Complete F-measure results. This file contains a table with F-measure values for all tested clusteri...
Comparison of GO distance functions. This file contains figures comparing F-measure and the number o...
IPN. The IPN derived from the four different PPINs of four species is shown. They include human, wor...
Table S1. Performance comparison on known protein complexes using ClusterONE. Table S2. Performance ...
Some details regarding the five clustering algorithm algorithms (MCL, RNSC, CR, LD and GAPPI) are de...
Optimal number of clusters. The suitable number of clusters for hierarchical clustering method was c...
Figure S1. detailing manual curation protocol and Table S1. providing MeSH term pairings. (DOCX 27 k...
Clusters silhouette plots. Each color represents a cluster and each bar with specific color indicate...
Clustering properties results. These properties include connectivity, Dunn and Silhouette scores. Th...
Network Parameters. Some network parameter are included to gain clear insight about four PPINs and I...
Constructed tissue-specific protein interaction networks in 16 tissues. (XLSX 7067 kb
motif_graphs.cys. Cytoscape file of the ENCODE-motif dataset graph and its clustered graphs as descr...
The 26 pairs of drugs which occur together in Drug Clustering Tier 1. These drug pairs occur togethe...