Text S1. Axis labels for Figures in Paper. Table S1. MeSH Annotations of Representative Compendium Samples. Figure S1. KNN-kneeplots from Full Compendium. Figure S2. Tanglegram of FC and Gene space dendrograms (MAQC data). Figure S3. Heatmap of all samples in nervous system (GSE3536). Figure S4. Clustering of GSE71370 samples using 6636 DE genes. Figure S5. Reanalysis of GSE7538 (Parthenolide study used by Engreitz et al.). Figure S6. Number of unique GO terms versus number of leading principal components from PCA. Table S2. Full GO annotations for DE FCs in E-MTAB-3162. Table S3. Full GO annotations for DE FCs in GSE71370. (ZIP 1335 kb
PAM50 classification quality control of TCGA’s samples I. A) Principal components analysis of the tr...
Table S1. Primer sequences used for gene expression analyses. Table S2. Quantification of gene expre...
Functional analysis of genes with high and low number of commonly co-expressed genes. Sheet 1: Funct...
GWAS information. Table S2. SMR results (P SMR <8.4 × 10–6). Table S3. SMR and HEIDI results (P HEID...
Table S1. Summary of the numbers of oligos and cDNAs analyzed for each nucleus. Table S2. Summary of...
Table S1. List of tissues and cell types. Table S2. Median HLA expression values of the GTEx and HPA...
PCA of the 15 Exon-Arrays dataset using the 489 gene signature build for MSCs. (A) Biplot of the PCA...
List of 1655 genes with a negative jGRP statistic meaning a down-regulation in LUAD tissues relative...
Table S1. Sequencing and mapping statistics. Listed are the sequencing details and mapping statistic...
Cluster and principal component analyses. (A) Hierarchical cluster analysis. The 28 samples were clu...
Table S1. Primers for qPCR. Table S2. The list of all features considered prior to feature selection...
Figure S1. Quality control of the dataset. Figure S2. Surface marker analysis and GO enrichment anal...
Gene coverage calculation (Table S1), reciprocal best BLAST paring (Table S2), full annotation and R...
Table S1. The sensitivity and specificity of GRIPT with CADD and other tests under the AR and AD mod...
Graph of reciprocal correlations between components computed with MSTD choice for the reduced dimens...
PAM50 classification quality control of TCGA’s samples I. A) Principal components analysis of the tr...
Table S1. Primer sequences used for gene expression analyses. Table S2. Quantification of gene expre...
Functional analysis of genes with high and low number of commonly co-expressed genes. Sheet 1: Funct...
GWAS information. Table S2. SMR results (P SMR <8.4 × 10–6). Table S3. SMR and HEIDI results (P HEID...
Table S1. Summary of the numbers of oligos and cDNAs analyzed for each nucleus. Table S2. Summary of...
Table S1. List of tissues and cell types. Table S2. Median HLA expression values of the GTEx and HPA...
PCA of the 15 Exon-Arrays dataset using the 489 gene signature build for MSCs. (A) Biplot of the PCA...
List of 1655 genes with a negative jGRP statistic meaning a down-regulation in LUAD tissues relative...
Table S1. Sequencing and mapping statistics. Listed are the sequencing details and mapping statistic...
Cluster and principal component analyses. (A) Hierarchical cluster analysis. The 28 samples were clu...
Table S1. Primers for qPCR. Table S2. The list of all features considered prior to feature selection...
Figure S1. Quality control of the dataset. Figure S2. Surface marker analysis and GO enrichment anal...
Gene coverage calculation (Table S1), reciprocal best BLAST paring (Table S2), full annotation and R...
Table S1. The sensitivity and specificity of GRIPT with CADD and other tests under the AR and AD mod...
Graph of reciprocal correlations between components computed with MSTD choice for the reduced dimens...
PAM50 classification quality control of TCGA’s samples I. A) Principal components analysis of the tr...
Table S1. Primer sequences used for gene expression analyses. Table S2. Quantification of gene expre...
Functional analysis of genes with high and low number of commonly co-expressed genes. Sheet 1: Funct...