Additional file 7: Figure SF3. of Determining the optimal number of independent components for reproducible transcriptomic data analysis

Graph of reciprocal correlations between components computed with MSTD choice for the reduced dimension and the number of components. The size of the points reflects their stability (larger points corresponds to more stable components). The color and the width of the edges reflect the Pearson correlation coefficient. Propositions of annotations of the pseudo-cliques in the graph are made based on the comparison with previously annotated metagenes [3] and the analysis of the top contributing genes using hypergeometric test and the toppgene web tool [30]. (PDF 315Â kb