FEELnc Coding Potential Scores for Cattle LncRNAs. The coding potential scores calculated by FEELnc. The “coding_potential” column is the coding potential score, with 0 being the least likely to be coding and 1 being most likely. The “label” column is 0 or 1 to indicate if the score lies above or below the cutoff determined by FEELnc using cross validation. 0 indicates a predicted lncRNA while 1 is a predicted coding transcript. (XLSX 173 kb
Expression of Chicken LncRNAs. FPKM values for all lncRNAs from each RNA-seq library (2 libraries pe...
Expression of Pig LncRNAs. FPKM values for all lncRNAs from each RNA-seq library (2 libraries per ti...
Predicted target genes for 10 lincRNAs with the highest FPKM values; Additional file 5a. Predicted t...
LncRNA Classes from Cattle. The output from the FEELnc Classifier program, which finds nearby protei...
Tissue-specific Indices of Cattle LncRNAs. The calculated tissue-specific indices (TSI) for each lnc...
LncRNA Classes from Pigs. The output from the FEELnc Classifier program, which finds nearby protein-...
GO terms associate with tissue-specific lncRNAs in cattle. This file contains tables from the DAVID ...
Sequences of Cattle LncRNAs. A fasta file containing all the lncRNA sequences from cattle. (FA 14461...
Exon Locations of Cattle LncRNAs. The genomic locations of the exons of all cattle lncRNAs. (GTF 435...
Conserved LncRNAs. The 39 groups of orthologous genes across all five species are listed with the as...
Mapping to NONCODE. The NONCODE IDs for each lncRNA found in the NONCODE database, as described in t...
GO terms associate with tissue-specific lncRNAs in pigs. This file contains tables from the DAVID an...
Tissue-specific Indices of Pig LncRNAs. The calculated tissue-specific indices (TSI) for each lncRNA...
Tissue-specific Indices of Chicken LncRNAs. The calculated tissue-specific indices (TSI) for each ln...
RT-PCR Gel Images for Validation. Gel images from a few RT-PCRs to verify a few of the predicted lnc...
Expression of Chicken LncRNAs. FPKM values for all lncRNAs from each RNA-seq library (2 libraries pe...
Expression of Pig LncRNAs. FPKM values for all lncRNAs from each RNA-seq library (2 libraries per ti...
Predicted target genes for 10 lincRNAs with the highest FPKM values; Additional file 5a. Predicted t...
LncRNA Classes from Cattle. The output from the FEELnc Classifier program, which finds nearby protei...
Tissue-specific Indices of Cattle LncRNAs. The calculated tissue-specific indices (TSI) for each lnc...
LncRNA Classes from Pigs. The output from the FEELnc Classifier program, which finds nearby protein-...
GO terms associate with tissue-specific lncRNAs in cattle. This file contains tables from the DAVID ...
Sequences of Cattle LncRNAs. A fasta file containing all the lncRNA sequences from cattle. (FA 14461...
Exon Locations of Cattle LncRNAs. The genomic locations of the exons of all cattle lncRNAs. (GTF 435...
Conserved LncRNAs. The 39 groups of orthologous genes across all five species are listed with the as...
Mapping to NONCODE. The NONCODE IDs for each lncRNA found in the NONCODE database, as described in t...
GO terms associate with tissue-specific lncRNAs in pigs. This file contains tables from the DAVID an...
Tissue-specific Indices of Pig LncRNAs. The calculated tissue-specific indices (TSI) for each lncRNA...
Tissue-specific Indices of Chicken LncRNAs. The calculated tissue-specific indices (TSI) for each ln...
RT-PCR Gel Images for Validation. Gel images from a few RT-PCRs to verify a few of the predicted lnc...
Expression of Chicken LncRNAs. FPKM values for all lncRNAs from each RNA-seq library (2 libraries pe...
Expression of Pig LncRNAs. FPKM values for all lncRNAs from each RNA-seq library (2 libraries per ti...
Predicted target genes for 10 lincRNAs with the highest FPKM values; Additional file 5a. Predicted t...