Figure S3. An example showing VisANT visualization of the WGCNA weighted network. The network presents the relationships among the top hub genes in the ‘grey60” module for the RNAseq dataset. Only lncRNA-mRNA pair with TOM values > = 0.8 were presented in the network. Green circle: mRNAs; and blue circle: lncRNAs. (TIF 463 kb
(A) The dendrogram shows 19 lncRNAs-mRNA co-expression modules identified using WGCNA. (B) The heatm...
Circles represent coding genes, and arrows represent lncRNAs. Red nodes represent upregulated nodes,...
qPCR validation of the lncRNA-miRNA-mRNA relationships of the miR159a.1 and miR398a networks. (a) mi...
Table S2. Summary for the top hub genes with TOM values more than 0.5 in modules from 12 tissue RNAs...
Figure S1. The length distribution of the lncRNAs identified in this study. (TIF 915 kb
Figure S4. An heatmap example showing expression changes (Log2 transformed) of partial lncRNAs among...
Table S1. Summary information for RNAseq data and Transcriptome Shotgun Assembly (TSA) databases use...
Table S5. Summary for the DE lncRNA genes detected in tilapia in response to cold, salt and hypoxia ...
Table S7. The interaction between miRNAs and lncRNA data identified in tilapia. (XLSX 575 kb
Table S4. Primer information used in the validation of DE transcript expression by qRT-PCR. (XLSX 11...
Abstract Background Long noncoding RNAs (LncRNAs) play important roles in fundamental biological pro...
Table S3. Overrepresentation test of the lncRNA-associated mRNA geneset in Pantherdb database. Annot...
Hexagons represent mRNAs, and triangles represent lncRNAs. Light blue nodes represent KEGG pathways....
Number of tissue-specific lncRNA and mRNAs detected as outlier expression by applying ROKU [12] to R...
Building RPS and UAS model. (a) Correcting noise in sub-codon position signals. Raw, random and norm...
(A) The dendrogram shows 19 lncRNAs-mRNA co-expression modules identified using WGCNA. (B) The heatm...
Circles represent coding genes, and arrows represent lncRNAs. Red nodes represent upregulated nodes,...
qPCR validation of the lncRNA-miRNA-mRNA relationships of the miR159a.1 and miR398a networks. (a) mi...
Table S2. Summary for the top hub genes with TOM values more than 0.5 in modules from 12 tissue RNAs...
Figure S1. The length distribution of the lncRNAs identified in this study. (TIF 915 kb
Figure S4. An heatmap example showing expression changes (Log2 transformed) of partial lncRNAs among...
Table S1. Summary information for RNAseq data and Transcriptome Shotgun Assembly (TSA) databases use...
Table S5. Summary for the DE lncRNA genes detected in tilapia in response to cold, salt and hypoxia ...
Table S7. The interaction between miRNAs and lncRNA data identified in tilapia. (XLSX 575 kb
Table S4. Primer information used in the validation of DE transcript expression by qRT-PCR. (XLSX 11...
Abstract Background Long noncoding RNAs (LncRNAs) play important roles in fundamental biological pro...
Table S3. Overrepresentation test of the lncRNA-associated mRNA geneset in Pantherdb database. Annot...
Hexagons represent mRNAs, and triangles represent lncRNAs. Light blue nodes represent KEGG pathways....
Number of tissue-specific lncRNA and mRNAs detected as outlier expression by applying ROKU [12] to R...
Building RPS and UAS model. (a) Correcting noise in sub-codon position signals. Raw, random and norm...
(A) The dendrogram shows 19 lncRNAs-mRNA co-expression modules identified using WGCNA. (B) The heatm...
Circles represent coding genes, and arrows represent lncRNAs. Red nodes represent upregulated nodes,...
qPCR validation of the lncRNA-miRNA-mRNA relationships of the miR159a.1 and miR398a networks. (a) mi...