Table S11. Genes from two GO categories with significant G x E terms in the analysis of plants with past cold exposure and their controls (D4). (DOCX 13 kb
Table S2. Genes involved in ABA signaling pathway and DREBs in response to low temperature. (XLS 27 ...
Gene Ontology categories of GO class “Cellular Component” significantly over-represented among trans...
Gene Ontology categories of GO class “Molecular Function” significantly over-represented among trans...
Table S10. GO terms enriched amongst genes only downregulated in D4 and among genes downregulated in...
Table S9. GO terms enriched among genes only up-regulated in D4 and among genes up-regulated in both...
Table S5. A master list of genes expressed within cold and recovery analyses. (CSV 4615 kb
Table S8. Transcript abundance estimates of genes from GO category GO:00424542, response to hydrogen...
Table S7. Significantly enriched biological process, molecular function, and cellular component GO t...
Table S4. Number of genes significantly affected by factors at different false discovery rates (FDRs...
Figure S3. A plot of the proportion of mesophyll and bundle sheath cell-specific transcripts that ar...
Figure S2. Molecular function GO terms over-represented (Fisher Test, Benjamini-Hochberg adjusted p-...
Figure S1. Frequency of concordant alignments for RNA-Seq read pairs across five parameter sets for ...
Abstract Background Cold temperatures and their alleviation affect many plant traits including the a...
Differentially expressed genes/transcripts in at least one sample with 2 fold change and at p-value ...
Gene Ontology categories of GO class “Molecular Function” significantly over-represented among trans...
Table S2. Genes involved in ABA signaling pathway and DREBs in response to low temperature. (XLS 27 ...
Gene Ontology categories of GO class “Cellular Component” significantly over-represented among trans...
Gene Ontology categories of GO class “Molecular Function” significantly over-represented among trans...
Table S10. GO terms enriched amongst genes only downregulated in D4 and among genes downregulated in...
Table S9. GO terms enriched among genes only up-regulated in D4 and among genes up-regulated in both...
Table S5. A master list of genes expressed within cold and recovery analyses. (CSV 4615 kb
Table S8. Transcript abundance estimates of genes from GO category GO:00424542, response to hydrogen...
Table S7. Significantly enriched biological process, molecular function, and cellular component GO t...
Table S4. Number of genes significantly affected by factors at different false discovery rates (FDRs...
Figure S3. A plot of the proportion of mesophyll and bundle sheath cell-specific transcripts that ar...
Figure S2. Molecular function GO terms over-represented (Fisher Test, Benjamini-Hochberg adjusted p-...
Figure S1. Frequency of concordant alignments for RNA-Seq read pairs across five parameter sets for ...
Abstract Background Cold temperatures and their alleviation affect many plant traits including the a...
Differentially expressed genes/transcripts in at least one sample with 2 fold change and at p-value ...
Gene Ontology categories of GO class “Molecular Function” significantly over-represented among trans...
Table S2. Genes involved in ABA signaling pathway and DREBs in response to low temperature. (XLS 27 ...
Gene Ontology categories of GO class “Cellular Component” significantly over-represented among trans...
Gene Ontology categories of GO class “Molecular Function” significantly over-represented among trans...
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