Additional file 8: of Molecular foundations of chilling-tolerance of modern maize

Additional file 9: of Shared and genetically distinct Zea mays transcriptome responses to ongoing and past low temperature exposure

Luis Avila (2207125)
Wisam Obeidat (5876852)
Hugh Earl (5876855)
Xiaomu Niu (5876858)
William Hargreaves (5876861)
Lewis Lukens (250403)

October 2018

Figure S3. A plot of the proportion of mesophyll and bundle sheath cell-specific transcripts that ar...

Additional file 11: of Shared and genetically distinct Zea mays transcriptome responses to ongoing and past low temperature exposure

Luis Avila (2207125)
Wisam Obeidat (5876852)
Hugh Earl (5876855)
Xiaomu Niu (5876858)
William Hargreaves (5876861)
Lewis Lukens (250403)

October 2018

Table S8. Transcript abundance estimates of genes from GO category GO:00424542, response to hydrogen...

Additional file 1: Figure S1. of Integrated transcriptomics and metabolomics analysis to characterize cold stress responses in Nicotiana tabacum

Jingjing Jin (1277538)
Hui Zhang (7197)
Jianfeng Zhang (219107)
Pingping Liu (313822)
Xia Chen (299366)
Zefeng Li (636009)
Yalong Xu (4216729)
Peng Lu (158125)
Peijian Cao (83497)

June 2017

The expression levels for cold responsive genes ICE1 under cold treatment. 1: 2 h control; 2: 2 h tr...

Additional file 6: of Molecular foundations of chilling-tolerance of modern maize

Alicja Sobkowiak (209407)
Maciej Jończyk (209402)
Józef Adamczyk (3509051)
Jarosław Szczepanik (3509057)
Danuta Solecka (3509060)
Iwona Kuciara (3509054)
Katarzyna Hetmańczyk (820410)
Joanna Trzcinska-Danielewicz (209420)
Marcin Grzybowski (2168806)
Marek Skoneczny (217404)
Jan Fronk (160145)
Paweł Sowiński (209427)

February 2016

Gene Ontology categories of GO class “Molecular Function” significantly over-represented among trans...

Additional file 5: of Molecular foundations of chilling-tolerance of modern maize

Alicja Sobkowiak (209407)
Maciej Jończyk (209402)
Józef Adamczyk (3509051)
Jarosław Szczepanik (3509057)
Danuta Solecka (3509060)
Iwona Kuciara (3509054)
Katarzyna Hetmańczyk (820410)
Joanna Trzcinska-Danielewicz (209420)
Marcin Grzybowski (2168806)
Marek Skoneczny (217404)
Jan Fronk (160145)
Paweł Sowiński (209427)

February 2016

Gene Ontology categories of GO class “Molecular Function” significantly over-represented among trans...

Additional file 10: of Molecular foundations of chilling-tolerance of modern maize

Alicja Sobkowiak (209407)
Maciej Jończyk (209402)
Józef Adamczyk (3509051)
Jarosław Szczepanik (3509057)
Danuta Solecka (3509060)
Iwona Kuciara (3509054)
Katarzyna Hetmańczyk (820410)
Joanna Trzcinska-Danielewicz (209420)
Marcin Grzybowski (2168806)
Marek Skoneczny (217404)
Jan Fronk (160145)
Paweł Sowiński (209427)

February 2016

Gene Ontology categories of GO class “Biological Process” significantly over-represented among trans...

Additional file 20: of Molecular foundations of chilling-tolerance of modern maize

Alicja Sobkowiak (209407)
Maciej Jończyk (209402)
Józef Adamczyk (3509051)
Jarosław Szczepanik (3509057)
Danuta Solecka (3509060)
Iwona Kuciara (3509054)
Katarzyna Hetmańczyk (820410)
Joanna Trzcinska-Danielewicz (209420)
Marcin Grzybowski (2168806)
Marek Skoneczny (217404)
Jan Fronk (160145)
Paweł Sowiński (209427)

February 2016

Gene Ontology categories of GO class “Biological Process” significantly over-represented among trans...

Additional file 1: of Molecular foundations of chilling-tolerance of modern maize

Alicja Sobkowiak (209407)
Maciej Jończyk (209402)
Józef Adamczyk (3509051)
Jarosław Szczepanik (3509057)
Danuta Solecka (3509060)
Iwona Kuciara (3509054)
Katarzyna Hetmańczyk (820410)
Joanna Trzcinska-Danielewicz (209420)
Marcin Grzybowski (2168806)
Marek Skoneczny (217404)
Jan Fronk (160145)
Paweł Sowiński (209427)

February 2016

Rough data for field parameters of selected maize inbred lines at Smolice location in years 2004, 20...

Additional file 1: Table S1. of Association mapping for cold tolerance in two large maize inbred panels

Pedro Revilla (3418586)
Víctor Rodríguez (2970339)
Amando Ordás (3418580)
Renaud Rincent (3418571)
Alain Charcosset (193923)
Catherine Giauffret (3418574)
Albrecht Melchinger (3312309)
Chris-Carolin Schön (193958)
Eva Bauer (167407)
Thomas Altmann (8259)
Dominique Brunel (76116)
Jesús Moreno-González (3418583)
Laura Campo (3418577)
Milena Ouzunova (42740)
Ángel Álvarez (2670541)
José Ruíz de Galarreta (3418589)
Jacques Laborde (452491)
Rosa Malvar (3418592)

June 2016

Summary of the compression mixed linear model analysis for cold tolerance traits in two panels of de...

Additional file 6: of Shared and genetically distinct Zea mays transcriptome responses to ongoing and past low temperature exposure

Luis Avila (2207125)
Wisam Obeidat (5876852)
Hugh Earl (5876855)
Xiaomu Niu (5876858)
William Hargreaves (5876861)
Lewis Lukens (250403)

October 2018

Figure S2. Molecular function GO terms over-represented (Fisher Test, Benjamini-Hochberg adjusted p-...

Additional file 14: of Shared and genetically distinct Zea mays transcriptome responses to ongoing and past low temperature exposure

Luis Avila (2207125)
Wisam Obeidat (5876852)
Hugh Earl (5876855)
Xiaomu Niu (5876858)
William Hargreaves (5876861)
Lewis Lukens (250403)

October 2018

Table S11. Genes from two GO categories with significant G x E terms in the analysis of plants with ...

Additional file 13: of Shared and genetically distinct Zea mays transcriptome responses to ongoing and past low temperature exposure

Luis Avila (2207125)
Wisam Obeidat (5876852)
Hugh Earl (5876855)
Xiaomu Niu (5876858)
William Hargreaves (5876861)
Lewis Lukens (250403)

October 2018

Table S10. GO terms enriched amongst genes only downregulated in D4 and among genes downregulated in...

Additional file 4: Figure S3. of Maize plants can enter a standby mode to cope with chilling stress

Laëtitia Riva-Roveda (3519113)
Brigitte Escale (3519110)
Catherine Giauffret (3418574)
Claire Périlleux (185140)

October 2016

Effect of chilling on gene expression in the leaves of two maize hybrids. The 7-day chilling treatme...

Additional file 2: Table S2. of Association mapping for cold tolerance in two large maize inbred panels

Pedro Revilla (3418586)
Víctor Rodríguez (2970339)
Amando Ordás (3418580)
Renaud Rincent (3418571)
Alain Charcosset (193923)
Catherine Giauffret (3418574)
Albrecht Melchinger (3312309)
Chris-Carolin Schön (193958)
Eva Bauer (167407)
Thomas Altmann (8259)
Dominique Brunel (76116)
Jesús Moreno-González (3418583)
Laura Campo (3418577)
Milena Ouzunova (42740)
Ángel Álvarez (2670541)
José Ruíz de Galarreta (3418589)
Jacques Laborde (452491)
Rosa Malvar (3418592)

June 2016

SNPs declared as significantly associated to cold tolerance-related traits, chromosome location, P-V...

Additional file 7: of Shared and genetically distinct Zea mays transcriptome responses to ongoing and past low temperature exposure

Luis Avila (2207125)
Wisam Obeidat (5876852)
Hugh Earl (5876855)
Xiaomu Niu (5876858)
William Hargreaves (5876861)
Lewis Lukens (250403)

October 2018

Table S5. A master list of genes expressed within cold and recovery analyses. (CSV 4615 kb

Additional file 9: of Shared and genetically distinct Zea mays transcriptome responses to ongoing and past low temperature exposure

Luis Avila (2207125)
Wisam Obeidat (5876852)
Hugh Earl (5876855)
Xiaomu Niu (5876858)
William Hargreaves (5876861)
Lewis Lukens (250403)

October 2018

Figure S3. A plot of the proportion of mesophyll and bundle sheath cell-specific transcripts that ar...

Additional file 11: of Shared and genetically distinct Zea mays transcriptome responses to ongoing and past low temperature exposure

Luis Avila (2207125)
Wisam Obeidat (5876852)
Hugh Earl (5876855)
Xiaomu Niu (5876858)
William Hargreaves (5876861)
Lewis Lukens (250403)

October 2018

Table S8. Transcript abundance estimates of genes from GO category GO:00424542, response to hydrogen...

Additional file 1: Figure S1. of Integrated transcriptomics and metabolomics analysis to characterize cold stress responses in Nicotiana tabacum

Jingjing Jin (1277538)
Hui Zhang (7197)
Jianfeng Zhang (219107)
Pingping Liu (313822)
Xia Chen (299366)
Zefeng Li (636009)
Yalong Xu (4216729)
Peng Lu (158125)
Peijian Cao (83497)

June 2017

The expression levels for cold responsive genes ICE1 under cold treatment. 1: 2 h control; 2: 2 h tr...

Additional file 6: of Molecular foundations of chilling-tolerance of modern maize

Alicja Sobkowiak (209407)
Maciej Jończyk (209402)
Józef Adamczyk (3509051)
Jarosław Szczepanik (3509057)
Danuta Solecka (3509060)
Iwona Kuciara (3509054)
Katarzyna Hetmańczyk (820410)
Joanna Trzcinska-Danielewicz (209420)
Marcin Grzybowski (2168806)
Marek Skoneczny (217404)
Jan Fronk (160145)
Paweł Sowiński (209427)

February 2016

Gene Ontology categories of GO class “Molecular Function” significantly over-represented among trans...

Additional file 5: of Molecular foundations of chilling-tolerance of modern maize

Alicja Sobkowiak (209407)
Maciej Jończyk (209402)
Józef Adamczyk (3509051)
Jarosław Szczepanik (3509057)
Danuta Solecka (3509060)
Iwona Kuciara (3509054)
Katarzyna Hetmańczyk (820410)
Joanna Trzcinska-Danielewicz (209420)
Marcin Grzybowski (2168806)
Marek Skoneczny (217404)
Jan Fronk (160145)
Paweł Sowiński (209427)

February 2016

Gene Ontology categories of GO class “Molecular Function” significantly over-represented among trans...

Additional file 10: of Molecular foundations of chilling-tolerance of modern maize

Alicja Sobkowiak (209407)
Maciej Jończyk (209402)
Józef Adamczyk (3509051)
Jarosław Szczepanik (3509057)
Danuta Solecka (3509060)
Iwona Kuciara (3509054)
Katarzyna Hetmańczyk (820410)
Joanna Trzcinska-Danielewicz (209420)
Marcin Grzybowski (2168806)
Marek Skoneczny (217404)
Jan Fronk (160145)
Paweł Sowiński (209427)

February 2016

Gene Ontology categories of GO class “Biological Process” significantly over-represented among trans...

Additional file 20: of Molecular foundations of chilling-tolerance of modern maize

Alicja Sobkowiak (209407)
Maciej Jończyk (209402)
Józef Adamczyk (3509051)
Jarosław Szczepanik (3509057)
Danuta Solecka (3509060)
Iwona Kuciara (3509054)
Katarzyna Hetmańczyk (820410)
Joanna Trzcinska-Danielewicz (209420)
Marcin Grzybowski (2168806)
Marek Skoneczny (217404)
Jan Fronk (160145)
Paweł Sowiński (209427)

February 2016

Gene Ontology categories of GO class “Biological Process” significantly over-represented among trans...

Additional file 1: of Molecular foundations of chilling-tolerance of modern maize

Alicja Sobkowiak (209407)
Maciej Jończyk (209402)
Józef Adamczyk (3509051)
Jarosław Szczepanik (3509057)
Danuta Solecka (3509060)
Iwona Kuciara (3509054)
Katarzyna Hetmańczyk (820410)
Joanna Trzcinska-Danielewicz (209420)
Marcin Grzybowski (2168806)
Marek Skoneczny (217404)
Jan Fronk (160145)
Paweł Sowiński (209427)

February 2016

Rough data for field parameters of selected maize inbred lines at Smolice location in years 2004, 20...

Additional file 1: Table S1. of Association mapping for cold tolerance in two large maize inbred panels

Pedro Revilla (3418586)
Víctor Rodríguez (2970339)
Amando Ordás (3418580)
Renaud Rincent (3418571)
Alain Charcosset (193923)
Catherine Giauffret (3418574)
Albrecht Melchinger (3312309)
Chris-Carolin Schön (193958)
Eva Bauer (167407)
Thomas Altmann (8259)
Dominique Brunel (76116)
Jesús Moreno-González (3418583)
Laura Campo (3418577)
Milena Ouzunova (42740)
Ángel Álvarez (2670541)
José Ruíz de Galarreta (3418589)
Jacques Laborde (452491)
Rosa Malvar (3418592)

June 2016

Summary of the compression mixed linear model analysis for cold tolerance traits in two panels of de...

Additional file 6: of Shared and genetically distinct Zea mays transcriptome responses to ongoing and past low temperature exposure

Luis Avila (2207125)
Wisam Obeidat (5876852)
Hugh Earl (5876855)
Xiaomu Niu (5876858)
William Hargreaves (5876861)
Lewis Lukens (250403)

October 2018

Figure S2. Molecular function GO terms over-represented (Fisher Test, Benjamini-Hochberg adjusted p-...

Additional file 14: of Shared and genetically distinct Zea mays transcriptome responses to ongoing and past low temperature exposure

Luis Avila (2207125)
Wisam Obeidat (5876852)
Hugh Earl (5876855)
Xiaomu Niu (5876858)
William Hargreaves (5876861)
Lewis Lukens (250403)

October 2018

Table S11. Genes from two GO categories with significant G x E terms in the analysis of plants with ...

Additional file 13: of Shared and genetically distinct Zea mays transcriptome responses to ongoing and past low temperature exposure

Luis Avila (2207125)
Wisam Obeidat (5876852)
Hugh Earl (5876855)
Xiaomu Niu (5876858)
William Hargreaves (5876861)
Lewis Lukens (250403)

October 2018

Table S10. GO terms enriched amongst genes only downregulated in D4 and among genes downregulated in...

Additional file 4: Figure S3. of Maize plants can enter a standby mode to cope with chilling stress

Laëtitia Riva-Roveda (3519113)
Brigitte Escale (3519110)
Catherine Giauffret (3418574)
Claire Périlleux (185140)

October 2016

Effect of chilling on gene expression in the leaves of two maize hybrids. The 7-day chilling treatme...

Additional file 2: Table S2. of Association mapping for cold tolerance in two large maize inbred panels

Pedro Revilla (3418586)
Víctor Rodríguez (2970339)
Amando Ordás (3418580)
Renaud Rincent (3418571)
Alain Charcosset (193923)
Catherine Giauffret (3418574)
Albrecht Melchinger (3312309)
Chris-Carolin Schön (193958)
Eva Bauer (167407)
Thomas Altmann (8259)
Dominique Brunel (76116)
Jesús Moreno-González (3418583)
Laura Campo (3418577)
Milena Ouzunova (42740)
Ángel Álvarez (2670541)
José Ruíz de Galarreta (3418589)
Jacques Laborde (452491)
Rosa Malvar (3418592)

June 2016

SNPs declared as significantly associated to cold tolerance-related traits, chromosome location, P-V...

Additional file 7: of Shared and genetically distinct Zea mays transcriptome responses to ongoing and past low temperature exposure

Luis Avila (2207125)
Wisam Obeidat (5876852)
Hugh Earl (5876855)
Xiaomu Niu (5876858)
William Hargreaves (5876861)
Lewis Lukens (250403)

October 2018

Table S5. A master list of genes expressed within cold and recovery analyses. (CSV 4615 kb

Additional file 9: of Shared and genetically distinct Zea mays transcriptome responses to ongoing and past low temperature exposure

Luis Avila (2207125)
Wisam Obeidat (5876852)
Hugh Earl (5876855)
Xiaomu Niu (5876858)
William Hargreaves (5876861)
Lewis Lukens (250403)

October 2018

Figure S3. A plot of the proportion of mesophyll and bundle sheath cell-specific transcripts that ar...

Additional file 11: of Shared and genetically distinct Zea mays transcriptome responses to ongoing and past low temperature exposure

Luis Avila (2207125)
Wisam Obeidat (5876852)
Hugh Earl (5876855)
Xiaomu Niu (5876858)
William Hargreaves (5876861)
Lewis Lukens (250403)

October 2018

Table S8. Transcript abundance estimates of genes from GO category GO:00424542, response to hydrogen...

Additional file 1: Figure S1. of Integrated transcriptomics and metabolomics analysis to characterize cold stress responses in Nicotiana tabacum

Jingjing Jin (1277538)
Hui Zhang (7197)
Jianfeng Zhang (219107)
Pingping Liu (313822)
Xia Chen (299366)
Zefeng Li (636009)
Yalong Xu (4216729)
Peng Lu (158125)
Peijian Cao (83497)

June 2017

The expression levels for cold responsive genes ICE1 under cold treatment. 1: 2 h control; 2: 2 h tr...

Additional file 8: of Molecular foundations of chilling-tolerance of modern maize

Abstract

Extracted data

Additional file 8: of Molecular foundations of chilling-tolerance of modern maize

Abstract

Extracted data

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