Additional file 12: of Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations

Additional file 3: Table S3. of Metabolic capability and in situ activity of microorganisms in an oil reservoir

Yi-Fan Liu (2901572)
Daniela Galzerani (4741437)
Serge Mbadinga (3455288)
Livia Zaramela (4741440)
Ji-Dong Gu (383457)
Bo-Zhong Mu (2030644)
Karsten Zengler (247723)

January 2018

Taxonomic classification of assembled 16S rRNA gene sequences from metagenomes of W2, W9 and W15. (D...

Characterization of oily sludge from a refinery and biodegradability assessment using various hydrocarbon degrading strains and reconstituted consortia

JASMINE, J
MUKHERJI, S

January 2015

Oily sludge obtained from a refinery in India contained 10-11% oil associated with fine particulates...

Isolation and characterization of a new bacterial strain from petroleum oil contaminated soil

Arunkumar Maiti
Sudip Das
An Bhattacharyya

October 2016

Abstract-Polycyclic aromatic hydrocarbons have different natural and anthropogenic sources and are w...

Additional file 6: of Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations

Ajoy Roy (5881004)
Pinaki Sar (551330)
Jayeeta Sarkar (452309)
Avishek Dutta (3833845)
Poulomi Sarkar (5881007)
Abhishek Gupta (402938)
Balaram Mohapatra (1410808)
Siddhartha Pal (1718821)
Sufia Kazy (5881010)

October 2018

Figure S3. Distribution of minor phyla with cumulative abundance of <â0.5. (PPTX 43 kb

Additional file 13: of Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations

Ajoy Roy (5881004)
Pinaki Sar (551330)
Jayeeta Sarkar (452309)
Avishek Dutta (3833845)
Poulomi Sarkar (5881007)
Abhishek Gupta (402938)
Balaram Mohapatra (1410808)
Siddhartha Pal (1718821)
Sufia Kazy (5881010)

October 2018

Table S5. Detailed distribution of predictive genes within sludge metagenomes using PICRUSt. (DOC 87...

Additional file 7: of Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations

Ajoy Roy (5881004)
Pinaki Sar (551330)
Jayeeta Sarkar (452309)
Avishek Dutta (3833845)
Poulomi Sarkar (5881007)
Abhishek Gupta (402938)
Balaram Mohapatra (1410808)
Siddhartha Pal (1718821)
Sufia Kazy (5881010)

October 2018

Figure S4. Heat map indicating the relative abundance of minor genera with cumulative abundance of 0...

Additional file 3: of Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations

Ajoy Roy (5881004)
Pinaki Sar (551330)
Jayeeta Sarkar (452309)
Avishek Dutta (3833845)
Poulomi Sarkar (5881007)
Abhishek Gupta (402938)
Balaram Mohapatra (1410808)
Siddhartha Pal (1718821)
Sufia Kazy (5881010)

October 2018

Figure S1. Rarefaction curves of the three oily sludge samples (GR1, DB2 and GR3) on the basis of OT...

Additional file 5: of Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations

Ajoy Roy (5881004)
Pinaki Sar (551330)
Jayeeta Sarkar (452309)
Avishek Dutta (3833845)
Poulomi Sarkar (5881007)
Abhishek Gupta (402938)
Balaram Mohapatra (1410808)
Siddhartha Pal (1718821)
Sufia Kazy (5881010)

October 2018

Figure S2. Venn diagram of unique and shared taxa. Unique and shared taxa distribution between 3 sam...

Additional file 11: of Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations

Ajoy Roy (5881004)
Pinaki Sar (551330)
Jayeeta Sarkar (452309)
Avishek Dutta (3833845)
Poulomi Sarkar (5881007)
Abhishek Gupta (402938)
Balaram Mohapatra (1410808)
Siddhartha Pal (1718821)
Sufia Kazy (5881010)

October 2018

Figure S8. Phylogentic tree representing of clade 4 of top 50 most abundant OTUs. Tree was construct...

Additional file 8: of Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations

Ajoy Roy (5881004)
Pinaki Sar (551330)
Jayeeta Sarkar (452309)
Avishek Dutta (3833845)
Poulomi Sarkar (5881007)
Abhishek Gupta (402938)
Balaram Mohapatra (1410808)
Siddhartha Pal (1718821)
Sufia Kazy (5881010)

October 2018

Figure S5. Phylogentic tree representing of clade1 of top 50 most abundant OTUs. Tree was constructe...

Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations

Ajoy Roy
Pinaki Sar
Jayeeta Sarkar
Avishek Dutta
Poulomi Sarkar
Abhishek Gupta
Balaram Mohapatra
Siddhartha Pal
Sufia K Kazy

October 2018

Abstract Background Sustainable management of voluminous and hazardous oily sludge produced by petro...

Additional file 9: of Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations

Ajoy Roy (5881004)
Pinaki Sar (551330)
Jayeeta Sarkar (452309)
Avishek Dutta (3833845)
Poulomi Sarkar (5881007)
Abhishek Gupta (402938)
Balaram Mohapatra (1410808)
Siddhartha Pal (1718821)
Sufia Kazy (5881010)

October 2018

Figure S6. Phylogentic tree representing of clade 2 of top 50 most abundant OTUs. Tree was construct...

Additional file 7: Figure S4. of More than 2500 years of oil exposure shape sediment microbiomes with the potential for syntrophic degradation of hydrocarbons linked to methanogenesis

Antonios Michas (4428142)
Gisle Vestergaard (128321)
Kathleen Trautwein (4428148)
Pavlos Avramidis (4428139)
Dimitris Hatzinikolaou (3470414)
Constantinos Vorgias (4428145)
Heinz Wilkes (1333596)
Ralf Rabus (2556805)
Michael Schloter (140906)
Anne Schöler (782457)

September 2017

Distribution and abundance of prokaryotic taxa at different depths of the NE and HE sites. The ten m...

Additional file 2: Table S1. of More than 2500Â years of oil exposure shape sediment microbiomes with the potential for syntrophic degradation of hydrocarbons linked to methanogenesis

Antonios Michas (4428142)
Gisle Vestergaard (128321)
Kathleen Trautwein (4428148)
Pavlos Avramidis (4428139)
Dimitris Hatzinikolaou (3470414)
Constantinos Vorgias (4428145)
Heinz Wilkes (1333596)
Ralf Rabus (2556805)
Michael Schloter (140906)
Anne SchĂśler (4428151)

September 2017

Selected genes quantified in Keri Lake metagenomes. The gene subunits and the corresponding Uniprot ...

Additional file 12: Table S8. of Metabolic capability and in situ activity of microorganisms in an oil reservoir

Yi-Fan Liu (2901572)
Daniela Galzerani (4741437)
Serge Mbadinga (3455288)
Livia Zaramela (4741440)
Ji-Dong Gu (383457)
Bo-Zhong Mu (2030644)
Karsten Zengler (247723)

January 2018

Geochemical characterization of production water from three wells from the Jiangsu oil field, China....

Additional file 3: Table S3. of Metabolic capability and in situ activity of microorganisms in an oil reservoir

Yi-Fan Liu (2901572)
Daniela Galzerani (4741437)
Serge Mbadinga (3455288)
Livia Zaramela (4741440)
Ji-Dong Gu (383457)
Bo-Zhong Mu (2030644)
Karsten Zengler (247723)

January 2018

Taxonomic classification of assembled 16S rRNA gene sequences from metagenomes of W2, W9 and W15. (D...

Characterization of oily sludge from a refinery and biodegradability assessment using various hydrocarbon degrading strains and reconstituted consortia

JASMINE, J
MUKHERJI, S

January 2015

Oily sludge obtained from a refinery in India contained 10-11% oil associated with fine particulates...

Isolation and characterization of a new bacterial strain from petroleum oil contaminated soil

Arunkumar Maiti
Sudip Das
An Bhattacharyya

October 2016

Abstract-Polycyclic aromatic hydrocarbons have different natural and anthropogenic sources and are w...

Additional file 6: of Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations

Ajoy Roy (5881004)
Pinaki Sar (551330)
Jayeeta Sarkar (452309)
Avishek Dutta (3833845)
Poulomi Sarkar (5881007)
Abhishek Gupta (402938)
Balaram Mohapatra (1410808)
Siddhartha Pal (1718821)
Sufia Kazy (5881010)

October 2018

Figure S3. Distribution of minor phyla with cumulative abundance of <â0.5. (PPTX 43 kb

Additional file 13: of Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations

Ajoy Roy (5881004)
Pinaki Sar (551330)
Jayeeta Sarkar (452309)
Avishek Dutta (3833845)
Poulomi Sarkar (5881007)
Abhishek Gupta (402938)
Balaram Mohapatra (1410808)
Siddhartha Pal (1718821)
Sufia Kazy (5881010)

October 2018

Table S5. Detailed distribution of predictive genes within sludge metagenomes using PICRUSt. (DOC 87...

Additional file 7: of Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations

Ajoy Roy (5881004)
Pinaki Sar (551330)
Jayeeta Sarkar (452309)
Avishek Dutta (3833845)
Poulomi Sarkar (5881007)
Abhishek Gupta (402938)
Balaram Mohapatra (1410808)
Siddhartha Pal (1718821)
Sufia Kazy (5881010)

October 2018

Figure S4. Heat map indicating the relative abundance of minor genera with cumulative abundance of 0...

Additional file 3: of Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations

Ajoy Roy (5881004)
Pinaki Sar (551330)
Jayeeta Sarkar (452309)
Avishek Dutta (3833845)
Poulomi Sarkar (5881007)
Abhishek Gupta (402938)
Balaram Mohapatra (1410808)
Siddhartha Pal (1718821)
Sufia Kazy (5881010)

October 2018

Figure S1. Rarefaction curves of the three oily sludge samples (GR1, DB2 and GR3) on the basis of OT...

Additional file 5: of Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations

Ajoy Roy (5881004)
Pinaki Sar (551330)
Jayeeta Sarkar (452309)
Avishek Dutta (3833845)
Poulomi Sarkar (5881007)
Abhishek Gupta (402938)
Balaram Mohapatra (1410808)
Siddhartha Pal (1718821)
Sufia Kazy (5881010)

October 2018

Figure S2. Venn diagram of unique and shared taxa. Unique and shared taxa distribution between 3 sam...

Additional file 11: of Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations

Ajoy Roy (5881004)
Pinaki Sar (551330)
Jayeeta Sarkar (452309)
Avishek Dutta (3833845)
Poulomi Sarkar (5881007)
Abhishek Gupta (402938)
Balaram Mohapatra (1410808)
Siddhartha Pal (1718821)
Sufia Kazy (5881010)

October 2018

Figure S8. Phylogentic tree representing of clade 4 of top 50 most abundant OTUs. Tree was construct...

Additional file 8: of Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations

Ajoy Roy (5881004)
Pinaki Sar (551330)
Jayeeta Sarkar (452309)
Avishek Dutta (3833845)
Poulomi Sarkar (5881007)
Abhishek Gupta (402938)
Balaram Mohapatra (1410808)
Siddhartha Pal (1718821)
Sufia Kazy (5881010)

October 2018

Figure S5. Phylogentic tree representing of clade1 of top 50 most abundant OTUs. Tree was constructe...

Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations

Ajoy Roy
Pinaki Sar
Jayeeta Sarkar
Avishek Dutta
Poulomi Sarkar
Abhishek Gupta
Balaram Mohapatra
Siddhartha Pal
Sufia K Kazy

October 2018

Abstract Background Sustainable management of voluminous and hazardous oily sludge produced by petro...

Additional file 9: of Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations

Ajoy Roy (5881004)
Pinaki Sar (551330)
Jayeeta Sarkar (452309)
Avishek Dutta (3833845)
Poulomi Sarkar (5881007)
Abhishek Gupta (402938)
Balaram Mohapatra (1410808)
Siddhartha Pal (1718821)
Sufia Kazy (5881010)

October 2018

Figure S6. Phylogentic tree representing of clade 2 of top 50 most abundant OTUs. Tree was construct...

Additional file 7: Figure S4. of More than 2500 years of oil exposure shape sediment microbiomes with the potential for syntrophic degradation of hydrocarbons linked to methanogenesis

Antonios Michas (4428142)
Gisle Vestergaard (128321)
Kathleen Trautwein (4428148)
Pavlos Avramidis (4428139)
Dimitris Hatzinikolaou (3470414)
Constantinos Vorgias (4428145)
Heinz Wilkes (1333596)
Ralf Rabus (2556805)
Michael Schloter (140906)
Anne Schöler (782457)

September 2017

Distribution and abundance of prokaryotic taxa at different depths of the NE and HE sites. The ten m...

Additional file 2: Table S1. of More than 2500Â years of oil exposure shape sediment microbiomes with the potential for syntrophic degradation of hydrocarbons linked to methanogenesis

Antonios Michas (4428142)
Gisle Vestergaard (128321)
Kathleen Trautwein (4428148)
Pavlos Avramidis (4428139)
Dimitris Hatzinikolaou (3470414)
Constantinos Vorgias (4428145)
Heinz Wilkes (1333596)
Ralf Rabus (2556805)
Michael Schloter (140906)
Anne SchĂśler (4428151)

September 2017

Selected genes quantified in Keri Lake metagenomes. The gene subunits and the corresponding Uniprot ...

Additional file 12: Table S8. of Metabolic capability and in situ activity of microorganisms in an oil reservoir

Yi-Fan Liu (2901572)
Daniela Galzerani (4741437)
Serge Mbadinga (3455288)
Livia Zaramela (4741440)
Ji-Dong Gu (383457)
Bo-Zhong Mu (2030644)
Karsten Zengler (247723)

January 2018

Geochemical characterization of production water from three wells from the Jiangsu oil field, China....

Additional file 3: Table S3. of Metabolic capability and in situ activity of microorganisms in an oil reservoir

Yi-Fan Liu (2901572)
Daniela Galzerani (4741437)
Serge Mbadinga (3455288)
Livia Zaramela (4741440)
Ji-Dong Gu (383457)
Bo-Zhong Mu (2030644)
Karsten Zengler (247723)

January 2018

Taxonomic classification of assembled 16S rRNA gene sequences from metagenomes of W2, W9 and W15. (D...

Characterization of oily sludge from a refinery and biodegradability assessment using various hydrocarbon degrading strains and reconstituted consortia

JASMINE, J
MUKHERJI, S

January 2015

Oily sludge obtained from a refinery in India contained 10-11% oil associated with fine particulates...

Isolation and characterization of a new bacterial strain from petroleum oil contaminated soil

Arunkumar Maiti
Sudip Das
An Bhattacharyya

October 2016

Abstract-Polycyclic aromatic hydrocarbons have different natural and anthropogenic sources and are w...

Additional file 12: of Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations

Abstract

Extracted data

Additional file 12: of Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations

Abstract

Extracted data

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