A functional prediction of the genes encoded by each GI predicted in the PA1 genome. Twenty GIs were predicted from the PA1 genome. Genomic regions indicate the exact genomic positions of each GI. Locus tags indicate genes encoded within the genome sequences of each GI. The predicted COG functions indicate the functional annotation based on the COG database. PK/NRP clusters were predicted within GI13, GI14 and GI20, including B6N31_13175âB6N31_13415, B6N31_15010âB6N31_15240, B6N31_21480âB6N31_21670. (XLSX 13 kb
Table S1. T5SS and T6SS effectors present in the different Dickeya fangzhongdai genomes. (DOCX 25 kb
Summary tables for gene conservation, variation, annotation, and functional enrichment analyses. Des...
Statistically significant overâ/under-representation of pfam functional annotations between pathog...
Phylogenetic analysis of Dickeya strains based on complete or draft genome sequences. Orthologous gr...
Genomic organization of vir clusters of the T4SS in Dickeya strains. The vir cluster of the T4SS in ...
GIs of D. fangzhongdai PA1 according to IslandViewer. This program integrates two sequence compositi...
Genomic organization of effector gene clusters of the T3SS in Dickeya strains. The effector gene clu...
Synteny analysis of Dickeya strains based on sequences of the flagellar-type T3SS. Strains analyzed ...
Phylogenetic analysis of D. fangzhongdai, D. dadantii and D. solani strains based on the protein seq...
Genomic organization of hrp-type T3SS in Dickeya strains. The hrp-type T3SS in D. fangzhongdai PA1 i...
Genomic organization of out-type T2SS in Dickeya strains. The out-type T2SS in D. fangzhongdai PA1 i...
Genetic differentiation and gene flow analysis of different D. fangzhongdai subpopulations. The Chin...
Calculation of isDDH between the genome sequences of D. fangzhongdai PA1 and other Dickeya strains. ...
Tables S2 and S3. Genes found in each of the JS5 and Nd14b genomic clades that are absent from the o...
Table S1. Dickeya solani strains in this study. Table S2. Sequencing data and mappings on the Dsl 33...
Table S1. T5SS and T6SS effectors present in the different Dickeya fangzhongdai genomes. (DOCX 25 kb
Summary tables for gene conservation, variation, annotation, and functional enrichment analyses. Des...
Statistically significant overâ/under-representation of pfam functional annotations between pathog...
Phylogenetic analysis of Dickeya strains based on complete or draft genome sequences. Orthologous gr...
Genomic organization of vir clusters of the T4SS in Dickeya strains. The vir cluster of the T4SS in ...
GIs of D. fangzhongdai PA1 according to IslandViewer. This program integrates two sequence compositi...
Genomic organization of effector gene clusters of the T3SS in Dickeya strains. The effector gene clu...
Synteny analysis of Dickeya strains based on sequences of the flagellar-type T3SS. Strains analyzed ...
Phylogenetic analysis of D. fangzhongdai, D. dadantii and D. solani strains based on the protein seq...
Genomic organization of hrp-type T3SS in Dickeya strains. The hrp-type T3SS in D. fangzhongdai PA1 i...
Genomic organization of out-type T2SS in Dickeya strains. The out-type T2SS in D. fangzhongdai PA1 i...
Genetic differentiation and gene flow analysis of different D. fangzhongdai subpopulations. The Chin...
Calculation of isDDH between the genome sequences of D. fangzhongdai PA1 and other Dickeya strains. ...
Tables S2 and S3. Genes found in each of the JS5 and Nd14b genomic clades that are absent from the o...
Table S1. Dickeya solani strains in this study. Table S2. Sequencing data and mappings on the Dsl 33...
Table S1. T5SS and T6SS effectors present in the different Dickeya fangzhongdai genomes. (DOCX 25 kb
Summary tables for gene conservation, variation, annotation, and functional enrichment analyses. Des...
Statistically significant overâ/under-representation of pfam functional annotations between pathog...