CNV segment size as distribution per sample. Distribution of CNV segment size as percentage of chromosome arm in each sequenced tumor sample. Sequenza estimated sample ploidy and the threshold used for determining copy number amplification is shown for each sample as colored horizontal lines. (PDF 34 kb
Summary of the bioinformatic pipeline used to classify the variants detected by tNGS. (JPG 509 kb
GISTIC focal peaks for female cancers – gains and losses. Table S3A shows the number of focal peaks ...
All Mutect mutations 7. All SNV mutations called by Mutect and annotated by Oncotator for samples LT...
All CNV segs annotated. All CNV segs generated by Sequenza and annotated by Oncotator. (TXT 15904 kb
All Mutect mutations 3. All SNV mutations called by Mutect and annotated by Oncotator for samples LT...
All Mutect mutations 2. All SNV mutations called by Mutect and annotated by Oncotator for samples LT...
Copy number variation (CNV) GISTIC The Cancer Genome Atlas (TCGA). List of significant (q <0.25) amp...
Sample information of 587 ovarian patients and normal tissue samples with Copy number variation and ...
Focal peaks of GISTIC for female cancers based on CBS-segmented data (amplifications and deletions)....
Taqman assays used for CNV assessment at 7 gene loci. Table S3. Cancer-predisposing genes disrupted ...
Spearman correlation of four different homologous recombination deficiency scores. TAI, Telomeric al...
Focal peaks of GISTIC for female cancers based on PCF-segmented input data (amplifications and delet...
All Mutect mutations 4. All SNV mutations called by Mutect and annotated by Oncotator for samples LT...
All Mutect mutations 5. All SNV mutations called by Mutect and annotated by Oncotator for samples LT...
All Mutect mutations 8. All SNV mutations called by Mutect and annotated by Oncotator for samples LT...
Summary of the bioinformatic pipeline used to classify the variants detected by tNGS. (JPG 509 kb
GISTIC focal peaks for female cancers – gains and losses. Table S3A shows the number of focal peaks ...
All Mutect mutations 7. All SNV mutations called by Mutect and annotated by Oncotator for samples LT...
All CNV segs annotated. All CNV segs generated by Sequenza and annotated by Oncotator. (TXT 15904 kb
All Mutect mutations 3. All SNV mutations called by Mutect and annotated by Oncotator for samples LT...
All Mutect mutations 2. All SNV mutations called by Mutect and annotated by Oncotator for samples LT...
Copy number variation (CNV) GISTIC The Cancer Genome Atlas (TCGA). List of significant (q <0.25) amp...
Sample information of 587 ovarian patients and normal tissue samples with Copy number variation and ...
Focal peaks of GISTIC for female cancers based on CBS-segmented data (amplifications and deletions)....
Taqman assays used for CNV assessment at 7 gene loci. Table S3. Cancer-predisposing genes disrupted ...
Spearman correlation of four different homologous recombination deficiency scores. TAI, Telomeric al...
Focal peaks of GISTIC for female cancers based on PCF-segmented input data (amplifications and delet...
All Mutect mutations 4. All SNV mutations called by Mutect and annotated by Oncotator for samples LT...
All Mutect mutations 5. All SNV mutations called by Mutect and annotated by Oncotator for samples LT...
All Mutect mutations 8. All SNV mutations called by Mutect and annotated by Oncotator for samples LT...
Summary of the bioinformatic pipeline used to classify the variants detected by tNGS. (JPG 509 kb
GISTIC focal peaks for female cancers – gains and losses. Table S3A shows the number of focal peaks ...
All Mutect mutations 7. All SNV mutations called by Mutect and annotated by Oncotator for samples LT...