Additional file 2: of Genomic profiling in ovarian cancer retreated with platinum based chemotherapy presented homologous recombination deficiency and copy number imbalances of CCNE1 and RB1 genes

Additional file 3: of Landscape of genomic alterations in high-grade serous ovarian cancer from exceptional long- and short-term survivors

S. Yang (2246380)
Stephanie Lheureux (5919803)
Katherine Karakasis (5919806)
Julia Burnier (1864015)
Jeffery Bruce (5919809)
Derek Clouthier (5919812)
Arnavaz Danesh (5919815)
Rene Quevedo (5919818)
Mark Dowar (5919821)
Youstina Hanna (5919824)
Tiantian Li (53740)
Lin Lu (5759)
Wei Xu (28953)
Blaise Clarke (2202952)
Pamela Ohashi (5919827)
Patricia Shaw (359876)
Trevor Pugh (41426)
Amit Oza (3421889)

November 2018

CNV segment size as distribution per sample. Distribution of CNV segment size as percentage of chrom...

Additional file 1: of Germline mutations in BRCA1 and BRCA2 in epithelial ovarian cancer patients in Brazil

Sabino, Ester Cerdeira
Cabral, Larissa Garcia
de Bock, Truuske
Maistro, Simone
de Gouvêa, Ana Carolina Ribeiro Chaves
Ribeiro, Roberto Marques
Teixeira, Natalia
Encinas, Giselly
Diz, Maria del Pilar Estevez
Gaburo Junior, Nelson
Carraro, Dirce Maria
Katayama, Maria Lucia Hirata
Niewiadonski, Vivian Dionisio Tavares
Folgueira, Maria Aparecida Azevedo Koike
Chammas, Roger
Basic and Translational Research and Imaging Methodology Development in Groningen (BRIDGE)
Life Course Epidemiology (LCE)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)

March 2017

Supplementary Methods. Table S1. Clinical and pathological characteristics, BRCA sequencing and MLPA...

Additional file 1: Table S1. of Identification of recurrent focal copy number variations and their putative targeted driver genes in ovarian cancer

Liangcai Zhang (156659)
Ying Yuan (133529)
Karen Lu (202927)
Li Zhang (8200)

May 2016

Sample information of 587 ovarian patients and normal tissue samples with Copy number variation and ...

Additional file 1: of Genomic profiling in ovarian cancer retreated with platinum based chemotherapy presented homologous recombination deficiency and copy number imbalances of CCNE1 and RB1 genes

Alexandre Costa (204738)
Luisa Canto (6670367)
Simon Larsen (6408551)
Adriana Ribeiro (6670373)
Carlos Stecca (6670382)
Annabeth Petersen (6670385)
Mads Aagaard (6670391)
Louise Brot (6291917)
Jan Baumbach (14867)
Glauco Baiocchi (6291902)
Maria Achatz (6116561)
Silvia Rogatto (3994691)

May 2019

Flowchart representative of the inclusion criteria adopted in the study. (JPG 245 kb

Additional file 4: of Genomic profiling in ovarian cancer retreated with platinum based chemotherapy presented homologous recombination deficiency and copy number imbalances of CCNE1 and RB1 genes

Alexandre Costa (204738)
Luisa Canto (6670367)
Simon Larsen (6408551)
Adriana Ribeiro (6670373)
Carlos Stecca (6670382)
Annabeth Petersen (6670385)
Mads Aagaard (6670391)
Louise Brot (6291917)
Jan Baumbach (14867)
Glauco Baiocchi (6291902)
Maria Achatz (6116561)
Silvia Rogatto (3994691)

May 2019

BRCA1 and BRCA2 variants categorized according to ACMG (American College of Medical Genetics and Gen...

Additional file 3: of Genomic profiling in ovarian cancer retreated with platinum based chemotherapy presented homologous recombination deficiency and copy number imbalances of CCNE1 and RB1 genes

Alexandre Costa (204738)
Luisa Canto (6670367)
Simon Larsen (6408551)
Adriana Ribeiro (6670373)
Carlos Stecca (6670382)
Annabeth Petersen (6670385)
Mads Aagaard (6670391)
Louise Brot (6291917)
Jan Baumbach (14867)
Glauco Baiocchi (6291902)
Maria Achatz (6116561)
Silvia Rogatto (3994691)

May 2019

Spearman correlation of four different homologous recombination deficiency scores. TAI, Telomeric al...

Additional file 6: of Genomic profiling in ovarian cancer retreated with platinum based chemotherapy presented homologous recombination deficiency and copy number imbalances of CCNE1 and RB1 genes

Alexandre Costa (204738)
Luisa Canto (6670367)
Simon Larsen (6408551)
Adriana Ribeiro (6670373)
Carlos Stecca (6670382)
Annabeth Petersen (6670385)
Mads Aagaard (6670391)
Louise Brot (6291917)
Jan Baumbach (14867)
Glauco Baiocchi (6291902)
Maria Achatz (6116561)
Silvia Rogatto (3994691)

May 2019

Overall survival according to the genomic imbalances. A. Telomeric allelic imbalance (TAI); B. Loss ...

Additional file 5: of Genomic profiling in ovarian cancer retreated with platinum based chemotherapy presented homologous recombination deficiency and copy number imbalances of CCNE1 and RB1 genes

Alexandre Costa (204738)
Luisa Canto (6670367)
Simon Larsen (6408551)
Adriana Ribeiro (6670373)
Carlos Stecca (6670382)
Annabeth Petersen (6670385)
Mads Aagaard (6670391)
Louise Brot (6291917)
Jan Baumbach (14867)
Glauco Baiocchi (6291902)
Maria Achatz (6116561)
Silvia Rogatto (3994691)

May 2019

Progression free survival according to the molecular alterations. A. Telomeric allelic imbalance (tA...

Additional file 1: of Deregulation of the spindle assembly checkpoint is associated with paclitaxel resistance in ovarian cancer

Taryne Chong (5060453)
Amila Sarac (5060456)
Cindy Yao (3440612)
Linda Liao (3440618)
Nicola Lyttle (3440624)
Paul Boutros (196570)
John Bartlett (602286)
Melanie Spears (3440621)

April 2018

Table S1. List of significant genes illustrating enrichment and depletion of genes across 3 ovarian ...

Additional file 1: of BRCA1 and BRCA2 mutations and clinical interpretation in 398 ovarian cancer patients: comparison with breast cancer variants in a similar population

Florencia Cardoso (5626418)
Susana Goncalves (5626421)
Pablo Mele (5626424)
Natalia Liria (5626427)
Leonardo Sganga (2164849)
Ignacio Diaz Perez (5626430)
Ernesto Podesta (5626433)
Angela Solano (5626436)

November 2018

Pathogenic mutations in BRCA1 (NM_007294.3) and BRCA2 (NM_000059.3) genes (n = 96) detected in 398 p...

Additional file 2: of Next-generation sequencing-based genomic profiling analysis reveals novel mutations for clinical diagnosis in Chinese primary epithelial ovarian cancer patients

Lei Zhang (38117)
Min Luo (258201)
Hongying Yang (131218)
Shaoyan Zhu (6385814)
Xianliang Cheng (6385817)
Chen Qing (164164)

February 2019

Figure S2. Distribution of genes with novel mutations based on individual patients. (A) Distribution...

Additional file 1: of Germline mutations in BRCA1 and BRCA2 in epithelial ovarian cancer patients in Brazil

Sabino, Ester Cerdeira
Cabral, Larissa Garcia
de Bock, Truuske
Maistro, Simone
de Gouvêa, Ana Carolina Ribeiro Chaves
Ribeiro, Roberto Marques
Teixeira, Natalia
Encinas, Giselly
Diz, Maria del Pilar Estevez
Gaburo Junior, Nelson
Carraro, Dirce Maria
Katayama, Maria Lucia Hirata
Niewiadonski, Vivian Dionisio Tavares
Folgueira, Maria Aparecida Azevedo Koike
Chammas, Roger
Basic and Translational Research and Imaging Methodology Development in Groningen (BRIDGE)
Life Course Epidemiology (LCE)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)

March 2017

Supplementary Methods. Table S1. Clinical and pathological characteristics, BRCA sequencing and MLPA...

Additional file 1: of Germline mutations in BRCA1 and BRCA2 in epithelial ovarian cancer patients in Brazil

Sabino, Ester Cerdeira
Cabral, Larissa Garcia
de Bock, Truuske
Maistro, Simone
de Gouvêa, Ana Carolina Ribeiro Chaves
Ribeiro, Roberto Marques
Teixeira, Natalia
Encinas, Giselly
Diz, Maria del Pilar Estevez
Gaburo Junior, Nelson
Carraro, Dirce Maria
Katayama, Maria Lucia Hirata
Niewiadonski, Vivian Dionisio Tavares
Folgueira, Maria Aparecida Azevedo Koike
Chammas, Roger
Basic and Translational Research and Imaging Methodology Development in Groningen (BRIDGE)
Life Course Epidemiology (LCE)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)

March 2017

Supplementary Methods. Table S1. Clinical and pathological characteristics, BRCA sequencing and MLPA...

Additional file 1: of Next-generation sequencing-based genomic profiling analysis reveals novel mutations for clinical diagnosis in Chinese primary epithelial ovarian cancer patients

Lei Zhang (38117)
Min Luo (258201)
Hongying Yang (131218)
Shaoyan Zhu (6385814)
Xianliang Cheng (6385817)
Chen Qing (164164)

February 2019

Figure S1. Result of sanger sequencing. (A) Eleven mutations which were sanger sequenced. (B) - (H) ...

Additional file 1: of Germline mutations in BRCA1 and BRCA2 in epithelial ovarian cancer patients in Brazil

Sabino, Ester Cerdeira
Cabral, Larissa Garcia
de Bock, Truuske
Maistro, Simone
de Gouvêa, Ana Carolina Ribeiro Chaves
Ribeiro, Roberto Marques
Teixeira, Natalia
Encinas, Giselly
Diz, Maria del Pilar Estevez
Gaburo Junior, Nelson
Carraro, Dirce Maria
Katayama, Maria Lucia Hirata
Niewiadonski, Vivian Dionisio Tavares
Folgueira, Maria Aparecida Azevedo Koike
Chammas, Roger
Basic and Translational Research and Imaging Methodology Development in Groningen (BRIDGE)
Life Course Epidemiology (LCE)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)

March 2017

Supplementary Methods. Table S1. Clinical and pathological characteristics, BRCA sequencing and MLPA...

Additional file 3: of Landscape of genomic alterations in high-grade serous ovarian cancer from exceptional long- and short-term survivors

S. Yang (2246380)
Stephanie Lheureux (5919803)
Katherine Karakasis (5919806)
Julia Burnier (1864015)
Jeffery Bruce (5919809)
Derek Clouthier (5919812)
Arnavaz Danesh (5919815)
Rene Quevedo (5919818)
Mark Dowar (5919821)
Youstina Hanna (5919824)
Tiantian Li (53740)
Lin Lu (5759)
Wei Xu (28953)
Blaise Clarke (2202952)
Pamela Ohashi (5919827)
Patricia Shaw (359876)
Trevor Pugh (41426)
Amit Oza (3421889)

November 2018

CNV segment size as distribution per sample. Distribution of CNV segment size as percentage of chrom...

Additional file 1: of Germline mutations in BRCA1 and BRCA2 in epithelial ovarian cancer patients in Brazil

Sabino, Ester Cerdeira
Cabral, Larissa Garcia
de Bock, Truuske
Maistro, Simone
de Gouvêa, Ana Carolina Ribeiro Chaves
Ribeiro, Roberto Marques
Teixeira, Natalia
Encinas, Giselly
Diz, Maria del Pilar Estevez
Gaburo Junior, Nelson
Carraro, Dirce Maria
Katayama, Maria Lucia Hirata
Niewiadonski, Vivian Dionisio Tavares
Folgueira, Maria Aparecida Azevedo Koike
Chammas, Roger
Basic and Translational Research and Imaging Methodology Development in Groningen (BRIDGE)
Life Course Epidemiology (LCE)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)

March 2017

Supplementary Methods. Table S1. Clinical and pathological characteristics, BRCA sequencing and MLPA...

Additional file 1: Table S1. of Identification of recurrent focal copy number variations and their putative targeted driver genes in ovarian cancer

Liangcai Zhang (156659)
Ying Yuan (133529)
Karen Lu (202927)
Li Zhang (8200)

May 2016

Sample information of 587 ovarian patients and normal tissue samples with Copy number variation and ...

Additional file 1: of Genomic profiling in ovarian cancer retreated with platinum based chemotherapy presented homologous recombination deficiency and copy number imbalances of CCNE1 and RB1 genes

Alexandre Costa (204738)
Luisa Canto (6670367)
Simon Larsen (6408551)
Adriana Ribeiro (6670373)
Carlos Stecca (6670382)
Annabeth Petersen (6670385)
Mads Aagaard (6670391)
Louise Brot (6291917)
Jan Baumbach (14867)
Glauco Baiocchi (6291902)
Maria Achatz (6116561)
Silvia Rogatto (3994691)

May 2019

Flowchart representative of the inclusion criteria adopted in the study. (JPG 245 kb

Additional file 4: of Genomic profiling in ovarian cancer retreated with platinum based chemotherapy presented homologous recombination deficiency and copy number imbalances of CCNE1 and RB1 genes

Alexandre Costa (204738)
Luisa Canto (6670367)
Simon Larsen (6408551)
Adriana Ribeiro (6670373)
Carlos Stecca (6670382)
Annabeth Petersen (6670385)
Mads Aagaard (6670391)
Louise Brot (6291917)
Jan Baumbach (14867)
Glauco Baiocchi (6291902)
Maria Achatz (6116561)
Silvia Rogatto (3994691)

May 2019

BRCA1 and BRCA2 variants categorized according to ACMG (American College of Medical Genetics and Gen...

Additional file 3: of Genomic profiling in ovarian cancer retreated with platinum based chemotherapy presented homologous recombination deficiency and copy number imbalances of CCNE1 and RB1 genes

Alexandre Costa (204738)
Luisa Canto (6670367)
Simon Larsen (6408551)
Adriana Ribeiro (6670373)
Carlos Stecca (6670382)
Annabeth Petersen (6670385)
Mads Aagaard (6670391)
Louise Brot (6291917)
Jan Baumbach (14867)
Glauco Baiocchi (6291902)
Maria Achatz (6116561)
Silvia Rogatto (3994691)

May 2019

Spearman correlation of four different homologous recombination deficiency scores. TAI, Telomeric al...

Additional file 6: of Genomic profiling in ovarian cancer retreated with platinum based chemotherapy presented homologous recombination deficiency and copy number imbalances of CCNE1 and RB1 genes

Alexandre Costa (204738)
Luisa Canto (6670367)
Simon Larsen (6408551)
Adriana Ribeiro (6670373)
Carlos Stecca (6670382)
Annabeth Petersen (6670385)
Mads Aagaard (6670391)
Louise Brot (6291917)
Jan Baumbach (14867)
Glauco Baiocchi (6291902)
Maria Achatz (6116561)
Silvia Rogatto (3994691)

May 2019

Overall survival according to the genomic imbalances. A. Telomeric allelic imbalance (TAI); B. Loss ...

Additional file 5: of Genomic profiling in ovarian cancer retreated with platinum based chemotherapy presented homologous recombination deficiency and copy number imbalances of CCNE1 and RB1 genes

Alexandre Costa (204738)
Luisa Canto (6670367)
Simon Larsen (6408551)
Adriana Ribeiro (6670373)
Carlos Stecca (6670382)
Annabeth Petersen (6670385)
Mads Aagaard (6670391)
Louise Brot (6291917)
Jan Baumbach (14867)
Glauco Baiocchi (6291902)
Maria Achatz (6116561)
Silvia Rogatto (3994691)

May 2019

Progression free survival according to the molecular alterations. A. Telomeric allelic imbalance (tA...

Additional file 1: of Deregulation of the spindle assembly checkpoint is associated with paclitaxel resistance in ovarian cancer

Taryne Chong (5060453)
Amila Sarac (5060456)
Cindy Yao (3440612)
Linda Liao (3440618)
Nicola Lyttle (3440624)
Paul Boutros (196570)
John Bartlett (602286)
Melanie Spears (3440621)

April 2018

Table S1. List of significant genes illustrating enrichment and depletion of genes across 3 ovarian ...

Additional file 1: of BRCA1 and BRCA2 mutations and clinical interpretation in 398 ovarian cancer patients: comparison with breast cancer variants in a similar population

Florencia Cardoso (5626418)
Susana Goncalves (5626421)
Pablo Mele (5626424)
Natalia Liria (5626427)
Leonardo Sganga (2164849)
Ignacio Diaz Perez (5626430)
Ernesto Podesta (5626433)
Angela Solano (5626436)

November 2018

Pathogenic mutations in BRCA1 (NM_007294.3) and BRCA2 (NM_000059.3) genes (n = 96) detected in 398 p...

Additional file 2: of Next-generation sequencing-based genomic profiling analysis reveals novel mutations for clinical diagnosis in Chinese primary epithelial ovarian cancer patients

Lei Zhang (38117)
Min Luo (258201)
Hongying Yang (131218)
Shaoyan Zhu (6385814)
Xianliang Cheng (6385817)
Chen Qing (164164)

February 2019

Figure S2. Distribution of genes with novel mutations based on individual patients. (A) Distribution...

Additional file 1: of Germline mutations in BRCA1 and BRCA2 in epithelial ovarian cancer patients in Brazil

Sabino, Ester Cerdeira
Cabral, Larissa Garcia
de Bock, Truuske
Maistro, Simone
de Gouvêa, Ana Carolina Ribeiro Chaves
Ribeiro, Roberto Marques
Teixeira, Natalia
Encinas, Giselly
Diz, Maria del Pilar Estevez
Gaburo Junior, Nelson
Carraro, Dirce Maria
Katayama, Maria Lucia Hirata
Niewiadonski, Vivian Dionisio Tavares
Folgueira, Maria Aparecida Azevedo Koike
Chammas, Roger
Basic and Translational Research and Imaging Methodology Development in Groningen (BRIDGE)
Life Course Epidemiology (LCE)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)

March 2017

Supplementary Methods. Table S1. Clinical and pathological characteristics, BRCA sequencing and MLPA...

Additional file 1: of Germline mutations in BRCA1 and BRCA2 in epithelial ovarian cancer patients in Brazil

Sabino, Ester Cerdeira
Cabral, Larissa Garcia
de Bock, Truuske
Maistro, Simone
de Gouvêa, Ana Carolina Ribeiro Chaves
Ribeiro, Roberto Marques
Teixeira, Natalia
Encinas, Giselly
Diz, Maria del Pilar Estevez
Gaburo Junior, Nelson
Carraro, Dirce Maria
Katayama, Maria Lucia Hirata
Niewiadonski, Vivian Dionisio Tavares
Folgueira, Maria Aparecida Azevedo Koike
Chammas, Roger
Basic and Translational Research and Imaging Methodology Development in Groningen (BRIDGE)
Life Course Epidemiology (LCE)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)

March 2017

Supplementary Methods. Table S1. Clinical and pathological characteristics, BRCA sequencing and MLPA...

Additional file 1: of Next-generation sequencing-based genomic profiling analysis reveals novel mutations for clinical diagnosis in Chinese primary epithelial ovarian cancer patients

Lei Zhang (38117)
Min Luo (258201)
Hongying Yang (131218)
Shaoyan Zhu (6385814)
Xianliang Cheng (6385817)
Chen Qing (164164)

February 2019

Figure S1. Result of sanger sequencing. (A) Eleven mutations which were sanger sequenced. (B) - (H) ...

Additional file 1: of Germline mutations in BRCA1 and BRCA2 in epithelial ovarian cancer patients in Brazil

Sabino, Ester Cerdeira
Cabral, Larissa Garcia
de Bock, Truuske
Maistro, Simone
de Gouvêa, Ana Carolina Ribeiro Chaves
Ribeiro, Roberto Marques
Teixeira, Natalia
Encinas, Giselly
Diz, Maria del Pilar Estevez
Gaburo Junior, Nelson
Carraro, Dirce Maria
Katayama, Maria Lucia Hirata
Niewiadonski, Vivian Dionisio Tavares
Folgueira, Maria Aparecida Azevedo Koike
Chammas, Roger
Basic and Translational Research and Imaging Methodology Development in Groningen (BRIDGE)
Life Course Epidemiology (LCE)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)

March 2017

Supplementary Methods. Table S1. Clinical and pathological characteristics, BRCA sequencing and MLPA...

Additional file 3: of Landscape of genomic alterations in high-grade serous ovarian cancer from exceptional long- and short-term survivors

S. Yang (2246380)
Stephanie Lheureux (5919803)
Katherine Karakasis (5919806)
Julia Burnier (1864015)
Jeffery Bruce (5919809)
Derek Clouthier (5919812)
Arnavaz Danesh (5919815)
Rene Quevedo (5919818)
Mark Dowar (5919821)
Youstina Hanna (5919824)
Tiantian Li (53740)
Lin Lu (5759)
Wei Xu (28953)
Blaise Clarke (2202952)
Pamela Ohashi (5919827)
Patricia Shaw (359876)
Trevor Pugh (41426)
Amit Oza (3421889)

November 2018

CNV segment size as distribution per sample. Distribution of CNV segment size as percentage of chrom...

Additional file 1: of Germline mutations in BRCA1 and BRCA2 in epithelial ovarian cancer patients in Brazil

Sabino, Ester Cerdeira
Cabral, Larissa Garcia
de Bock, Truuske
Maistro, Simone
de Gouvêa, Ana Carolina Ribeiro Chaves
Ribeiro, Roberto Marques
Teixeira, Natalia
Encinas, Giselly
Diz, Maria del Pilar Estevez
Gaburo Junior, Nelson
Carraro, Dirce Maria
Katayama, Maria Lucia Hirata
Niewiadonski, Vivian Dionisio Tavares
Folgueira, Maria Aparecida Azevedo Koike
Chammas, Roger
Basic and Translational Research and Imaging Methodology Development in Groningen (BRIDGE)
Life Course Epidemiology (LCE)
Damage and Repair in Cancer Development and Cancer Treatment (DARE)

March 2017

Supplementary Methods. Table S1. Clinical and pathological characteristics, BRCA sequencing and MLPA...

Additional file 1: Table S1. of Identification of recurrent focal copy number variations and their putative targeted driver genes in ovarian cancer

Liangcai Zhang (156659)
Ying Yuan (133529)
Karen Lu (202927)
Li Zhang (8200)

May 2016

Sample information of 587 ovarian patients and normal tissue samples with Copy number variation and ...

Additional file 2: of Genomic profiling in ovarian cancer retreated with platinum based chemotherapy presented homologous recombination deficiency and copy number imbalances of CCNE1 and RB1 genes

Abstract

Extracted data

Additional file 2: of Genomic profiling in ovarian cancer retreated with platinum based chemotherapy presented homologous recombination deficiency and copy number imbalances of CCNE1 and RB1 genes

Abstract

Extracted data

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