Additional file 1:Â Supplementary information: of Loss of the Chr16p11.2 ASD candidate gene QPRT leads to aberrant neuronal differentiation in the SH-SY5Y neuronal cell model

Additional file 5: Table S1. of Human induced pluripotent stem cell derived neurons as a model for Williams-Beuren syndrome

Shahryar Khattak (291870)
Elise Brimble (506600)
Wenbo Zhang (498386)
Kirill Zaslavsky (3526682)
Emma Strong (3526676)
P. Ross (3526670)
Jason Hendry (3526673)
Seema Mital (248308)
Michael Salter (3526679)
Lucy Osborne (433097)
James Ellis (43923)

November 2015

Primers used for quantitative real-time PCR validation of differentially expressed genes. (XLSX 54Â ...

Additional file 1: Figure S1. of Characterisation of neurons derived from a cortical human neural stem cell line CTX0E16

Greg Anderson (2703046)
P. Deans (3565109)
Ruth Taylor (3565127)
Pooja Raval (3565112)
Ding Chen (17069)
Harrison Lowder (3565121)
Srishti Murkerji (3565115)
Laura Andreae (3565118)
Brenda Williams (3565124)
Deepak Srivastava (165553)

August 2015

Expression profile of undifferentiated and differentiated (DD28) CTX0E16 cells. Undifferentiated CTX...

Additional file 11: of Loss of CREST leads to neuroinflammatory responses and ALS-like motor defects in mice

Cheng Cheng (68821)
Kan Yang (49193)
Xinwei Wu (2928303)
Yuefang Zhang (6547880)
Shifang Shan (6547883)
Aaron Gitler (6547886)
Anirvan Ghosh (508613)
Zilong Qiu (171951)

April 2019

Figure S6. Validation of Knockdown Efficiency of shRNAs and Inhibitory Effect of CREST on Transcript...

Additional file 2:Â Supplementary table S2. of Loss of the Chr16p11.2 ASD candidate gene QPRT leads to aberrant neuronal differentiation in the SH-SY5Y neuronal cell model

Denise Haslinger (5940275)
Regina Waltes (184878)
Afsheen Yousaf (5940278)
Silvia Lindlar (5940281)
Ines Schneider (5940284)
Chai Lim (1783117)
Meng-Miao Tsai (5940287)
Boyan Garvalov (5940290)
Amparo Acker-Palmer (3173001)
Nicolas Krezdorn (2573719)
BjĂśrn Rotter (5162456)
Till Acker (4091635)
Gilles Guillemin (3523148)
Simone Fulda (106002)
Christine Freitag (314982)
Andreas Chiocchetti (184869)

November 2018

Results from DESeq2 analysis and count data from RNA-Seq (MACE analysis).Â (XLSX 5308 kb

Additional file 1: Tables S1âS9. of Significant transcriptional changes in 15q duplication but not Angelman syndrome deletion stem cell-derived neurons

Nora Urraca (4454005)
Kevin Hope (4802523)
A. Victor (4802526)
T. Belgard (4802532)
Rawaha Memon (4802529)
Sarita Goorha (4802508)
Colleen Valdez (4802514)
Quynh Tran (4535191)
Silvia Sanchez (4802517)
Juanma Ramirez (812674)
Martin Donaldson (4802511)
Dave Bridges (26908)
Lawrence Reiter (4802520)

January 2018

Complete GSEA analysis for all samples and FOXO1 and functional enrichment analysis of ASD brain vs ...

Additional file 1: of Autism-associated CHD8 deficiency impairs axon development and migration of cortical neurons

Qiong Xu (204847)
Yuan-yuan Liu (2575882)
Xiaoming Wang (187053)
Guo-he Tan (6105170)
Hui-ping Li (6105173)
Samuel Hulbert (6105176)
Chun-yang Li (5049653)
Chun-chun Hu (5049647)
Zhi-qi Xiong (6105179)
Xiu Xu (498635)
Yong-hui Jiang (243375)

December 2018

Validation of rescued constructs against shRNA-mediated knockdown of mouse Chd8 in transfected neuro...

Additional file 1: of Burden of de novo mutations and inherited rare single nucleotide variants in children with sensory processing dysfunction

Elysa Marco (5290844)
Anne Aitken (5290841)
Vishnu Nair (5290850)
Gilberto da Gente (5290859)
Molly Gerdes (5290856)
Leyla Bologlu (5290847)
Sean Thomas (75243)
Elliott Sherr (5290853)

May 2018

High- Probability Risk ASD Gene Set. Table of seventy-six genes from AutDB determined to be âproba...

Additional file 1: Figure S1. of GDE2 is essential for neuronal survival in the postnatal mammalian spinal cord

Clinton Cave (3682822)
Sungjin Park (616979)
Marianeli Rodriguez (3682819)
Mai Nakamura (634579)
Ahmet Hoke (3145032)
Mikhail Pletnikov (3682825)
Shanthini Sockanathan (3682816)

January 2017

Sensory neurons exhibit neurodegenerative pathology without impaired nerve conduction in the absence...

Additional file 1: of Role of miR-146a in neural stem cell differentiation and neural lineage determination: relevance for neurodevelopmental disorders

Lam Nguyen (799184)
Julien Fregeac (3458822)
Christine Bole-Feysot (182)
Nicolas Cagnard (169832)
Anand Iyer (135705)
Jasper Anink (3427148)
Eleonora Aronica (135729)
Olivier Alibeu (5424548)
Patrick Nitschke (526224)
Laurence Colleaux (3458834)

June 2018

Table S1. Detailed information of all patients and controls whose brain samples were used in this st...

Additional file 1: Table S1. of Membrane-enriched proteome changes and prion protein expression during neural differentiation and in neuroblastoma cells

J. Macedo (3945281)
D. Schrama (3945293)
I. Duarte (3945278)
E. Tavares (3945287)
J. Renaut (3945284)
M. Futschik (3945296)
P. Rodrigues (2178910)
E. Melo (3945290)

April 2017

and Table S2. Oligonucleotides used for qPCR of mouse specific genes & Protein spots differentially ...

Additional file 10: of CRISPR/Cas9-mediated heterozygous knockout of the autism gene CHD8 and characterization of its transcriptional networks in neurodevelopment

Ping Wang (42415)
Mingyan Lin (139065)
Erika Pedrosa (139072)
Anastasia Hrabovsky (139067)
Zheng Zhang (88857)
Wenjun Guo (3505481)
Herbert Lachman (3505484)
Deyou Zheng (7943)

October 2015

Table S9âS10. Numbers and putative functionally disrupted coding variants in the WT iPSC line. (PD...

Additional file 2: of Burden of de novo mutations and inherited rare single nucleotide variants in children with sensory processing dysfunction

Elysa Marco (5290844)
Anne Aitken (5290841)
Vishnu Nair (5290850)
Gilberto da Gente (5290859)
Molly Gerdes (5290856)
Leyla Bologlu (5290847)
Sean Thomas (75243)
Elliott Sherr (5290853)

May 2018

Moderate- Probability Risk ASD Gene Set. Table of 292 genes from AutDB categorized as possibly damag...

Additional file 9: Table S5. of Human induced pluripotent stem cell derived neurons as a model for Williams-Beuren syndrome

Shahryar Khattak (291870)
Elise Brimble (506600)
Wenbo Zhang (498386)
Kirill Zaslavsky (3526682)
Emma Strong (3526676)
P. Ross (3526670)
Jason Hendry (3526673)
Seema Mital (248308)
Michael Salter (3526679)
Lucy Osborne (433097)
James Ellis (43923)

November 2015

Table of differentially expressed genes used for ranking genes for GSEA. (XLS 4906Â kb

Additional file 1: of Novel and de novo mutations in pediatric refractory epilepsy

Jing Liu (38537)
Lili Tong (1781044)
Shuangshuang Song (5722589)
Yue Niu (5538038)
Jun Li (6494)
Xiu Wu (721033)
Jie Zhang (64655)
Clement Zai (5809022)
Fang Luo (277928)
Jian Wu (41301)
Haiyin Li (450445)
Albert Wong (365470)
Ruopeng Sun (549506)
Fang Liu (13271)
Baomin Li (12997)

September 2018

Table S1. The expression levels of the 153 targeted genes in brain. Table S2. The quality assurance ...

Additional file 1: of Modeling the quantitative nature of neurodevelopmental disorders using Collaborative Cross mice

Remco Molenhuis (3460445)
Hilgo Bruining (248024)
Myrna Brandt (6084731)
Petra Soldt (6084734)
Hanifa Abu-Toamih Atamni (6084737)
J. Burbach (3460448)
Fuad Iraqi (237899)
Richard Mott (1705)
Martien Kas (248049)

December 2018

Figure S1. Haplotype-based and broad-sense heritability estimates in CC mice. Figure S2. Phenotypic ...

Additional file 5: Table S1. of Human induced pluripotent stem cell derived neurons as a model for Williams-Beuren syndrome

Shahryar Khattak (291870)
Elise Brimble (506600)
Wenbo Zhang (498386)
Kirill Zaslavsky (3526682)
Emma Strong (3526676)
P. Ross (3526670)
Jason Hendry (3526673)
Seema Mital (248308)
Michael Salter (3526679)
Lucy Osborne (433097)
James Ellis (43923)

November 2015

Primers used for quantitative real-time PCR validation of differentially expressed genes. (XLSX 54Â ...

Additional file 1: Figure S1. of Characterisation of neurons derived from a cortical human neural stem cell line CTX0E16

Greg Anderson (2703046)
P. Deans (3565109)
Ruth Taylor (3565127)
Pooja Raval (3565112)
Ding Chen (17069)
Harrison Lowder (3565121)
Srishti Murkerji (3565115)
Laura Andreae (3565118)
Brenda Williams (3565124)
Deepak Srivastava (165553)

August 2015

Expression profile of undifferentiated and differentiated (DD28) CTX0E16 cells. Undifferentiated CTX...

Additional file 11: of Loss of CREST leads to neuroinflammatory responses and ALS-like motor defects in mice

Cheng Cheng (68821)
Kan Yang (49193)
Xinwei Wu (2928303)
Yuefang Zhang (6547880)
Shifang Shan (6547883)
Aaron Gitler (6547886)
Anirvan Ghosh (508613)
Zilong Qiu (171951)

April 2019

Figure S6. Validation of Knockdown Efficiency of shRNAs and Inhibitory Effect of CREST on Transcript...

Additional file 2:Â Supplementary table S2. of Loss of the Chr16p11.2 ASD candidate gene QPRT leads to aberrant neuronal differentiation in the SH-SY5Y neuronal cell model

Denise Haslinger (5940275)
Regina Waltes (184878)
Afsheen Yousaf (5940278)
Silvia Lindlar (5940281)
Ines Schneider (5940284)
Chai Lim (1783117)
Meng-Miao Tsai (5940287)
Boyan Garvalov (5940290)
Amparo Acker-Palmer (3173001)
Nicolas Krezdorn (2573719)
BjĂśrn Rotter (5162456)
Till Acker (4091635)
Gilles Guillemin (3523148)
Simone Fulda (106002)
Christine Freitag (314982)
Andreas Chiocchetti (184869)

November 2018

Results from DESeq2 analysis and count data from RNA-Seq (MACE analysis).Â (XLSX 5308 kb

Additional file 1: Tables S1âS9. of Significant transcriptional changes in 15q duplication but not Angelman syndrome deletion stem cell-derived neurons

Nora Urraca (4454005)
Kevin Hope (4802523)
A. Victor (4802526)
T. Belgard (4802532)
Rawaha Memon (4802529)
Sarita Goorha (4802508)
Colleen Valdez (4802514)
Quynh Tran (4535191)
Silvia Sanchez (4802517)
Juanma Ramirez (812674)
Martin Donaldson (4802511)
Dave Bridges (26908)
Lawrence Reiter (4802520)

January 2018

Complete GSEA analysis for all samples and FOXO1 and functional enrichment analysis of ASD brain vs ...

Additional file 1: of Autism-associated CHD8 deficiency impairs axon development and migration of cortical neurons

Qiong Xu (204847)
Yuan-yuan Liu (2575882)
Xiaoming Wang (187053)
Guo-he Tan (6105170)
Hui-ping Li (6105173)
Samuel Hulbert (6105176)
Chun-yang Li (5049653)
Chun-chun Hu (5049647)
Zhi-qi Xiong (6105179)
Xiu Xu (498635)
Yong-hui Jiang (243375)

December 2018

Validation of rescued constructs against shRNA-mediated knockdown of mouse Chd8 in transfected neuro...

Additional file 1: of Burden of de novo mutations and inherited rare single nucleotide variants in children with sensory processing dysfunction

Elysa Marco (5290844)
Anne Aitken (5290841)
Vishnu Nair (5290850)
Gilberto da Gente (5290859)
Molly Gerdes (5290856)
Leyla Bologlu (5290847)
Sean Thomas (75243)
Elliott Sherr (5290853)

May 2018

High- Probability Risk ASD Gene Set. Table of seventy-six genes from AutDB determined to be âproba...

Additional file 1: Figure S1. of GDE2 is essential for neuronal survival in the postnatal mammalian spinal cord

Clinton Cave (3682822)
Sungjin Park (616979)
Marianeli Rodriguez (3682819)
Mai Nakamura (634579)
Ahmet Hoke (3145032)
Mikhail Pletnikov (3682825)
Shanthini Sockanathan (3682816)

January 2017

Sensory neurons exhibit neurodegenerative pathology without impaired nerve conduction in the absence...

Additional file 1: of Role of miR-146a in neural stem cell differentiation and neural lineage determination: relevance for neurodevelopmental disorders

Lam Nguyen (799184)
Julien Fregeac (3458822)
Christine Bole-Feysot (182)
Nicolas Cagnard (169832)
Anand Iyer (135705)
Jasper Anink (3427148)
Eleonora Aronica (135729)
Olivier Alibeu (5424548)
Patrick Nitschke (526224)
Laurence Colleaux (3458834)

June 2018

Table S1. Detailed information of all patients and controls whose brain samples were used in this st...

Additional file 1: Table S1. of Membrane-enriched proteome changes and prion protein expression during neural differentiation and in neuroblastoma cells

J. Macedo (3945281)
D. Schrama (3945293)
I. Duarte (3945278)
E. Tavares (3945287)
J. Renaut (3945284)
M. Futschik (3945296)
P. Rodrigues (2178910)
E. Melo (3945290)

April 2017

and Table S2. Oligonucleotides used for qPCR of mouse specific genes & Protein spots differentially ...

Additional file 10: of CRISPR/Cas9-mediated heterozygous knockout of the autism gene CHD8 and characterization of its transcriptional networks in neurodevelopment

Ping Wang (42415)
Mingyan Lin (139065)
Erika Pedrosa (139072)
Anastasia Hrabovsky (139067)
Zheng Zhang (88857)
Wenjun Guo (3505481)
Herbert Lachman (3505484)
Deyou Zheng (7943)

October 2015

Table S9âS10. Numbers and putative functionally disrupted coding variants in the WT iPSC line. (PD...

Additional file 2: of Burden of de novo mutations and inherited rare single nucleotide variants in children with sensory processing dysfunction

Elysa Marco (5290844)
Anne Aitken (5290841)
Vishnu Nair (5290850)
Gilberto da Gente (5290859)
Molly Gerdes (5290856)
Leyla Bologlu (5290847)
Sean Thomas (75243)
Elliott Sherr (5290853)

May 2018

Moderate- Probability Risk ASD Gene Set. Table of 292 genes from AutDB categorized as possibly damag...

Additional file 9: Table S5. of Human induced pluripotent stem cell derived neurons as a model for Williams-Beuren syndrome

Shahryar Khattak (291870)
Elise Brimble (506600)
Wenbo Zhang (498386)
Kirill Zaslavsky (3526682)
Emma Strong (3526676)
P. Ross (3526670)
Jason Hendry (3526673)
Seema Mital (248308)
Michael Salter (3526679)
Lucy Osborne (433097)
James Ellis (43923)

November 2015

Table of differentially expressed genes used for ranking genes for GSEA. (XLS 4906Â kb

Additional file 1: of Novel and de novo mutations in pediatric refractory epilepsy

Jing Liu (38537)
Lili Tong (1781044)
Shuangshuang Song (5722589)
Yue Niu (5538038)
Jun Li (6494)
Xiu Wu (721033)
Jie Zhang (64655)
Clement Zai (5809022)
Fang Luo (277928)
Jian Wu (41301)
Haiyin Li (450445)
Albert Wong (365470)
Ruopeng Sun (549506)
Fang Liu (13271)
Baomin Li (12997)

September 2018

Table S1. The expression levels of the 153 targeted genes in brain. Table S2. The quality assurance ...

Additional file 1: of Modeling the quantitative nature of neurodevelopmental disorders using Collaborative Cross mice

Remco Molenhuis (3460445)
Hilgo Bruining (248024)
Myrna Brandt (6084731)
Petra Soldt (6084734)
Hanifa Abu-Toamih Atamni (6084737)
J. Burbach (3460448)
Fuad Iraqi (237899)
Richard Mott (1705)
Martien Kas (248049)

December 2018

Figure S1. Haplotype-based and broad-sense heritability estimates in CC mice. Figure S2. Phenotypic ...

Additional file 5: Table S1. of Human induced pluripotent stem cell derived neurons as a model for Williams-Beuren syndrome

Shahryar Khattak (291870)
Elise Brimble (506600)
Wenbo Zhang (498386)
Kirill Zaslavsky (3526682)
Emma Strong (3526676)
P. Ross (3526670)
Jason Hendry (3526673)
Seema Mital (248308)
Michael Salter (3526679)
Lucy Osborne (433097)
James Ellis (43923)

November 2015

Primers used for quantitative real-time PCR validation of differentially expressed genes. (XLSX 54Â ...

Additional file 1: Figure S1. of Characterisation of neurons derived from a cortical human neural stem cell line CTX0E16

Greg Anderson (2703046)
P. Deans (3565109)
Ruth Taylor (3565127)
Pooja Raval (3565112)
Ding Chen (17069)
Harrison Lowder (3565121)
Srishti Murkerji (3565115)
Laura Andreae (3565118)
Brenda Williams (3565124)
Deepak Srivastava (165553)

August 2015

Expression profile of undifferentiated and differentiated (DD28) CTX0E16 cells. Undifferentiated CTX...

Additional file 11: of Loss of CREST leads to neuroinflammatory responses and ALS-like motor defects in mice

Cheng Cheng (68821)
Kan Yang (49193)
Xinwei Wu (2928303)
Yuefang Zhang (6547880)
Shifang Shan (6547883)
Aaron Gitler (6547886)
Anirvan Ghosh (508613)
Zilong Qiu (171951)

April 2019

Figure S6. Validation of Knockdown Efficiency of shRNAs and Inhibitory Effect of CREST on Transcript...

Additional file 1:Â Supplementary information: of Loss of the Chr16p11.2 ASD candidate gene QPRT leads to aberrant neuronal differentiation in the SH-SY5Y neuronal cell model

Abstract

Extracted data

Additional file 1:Â Supplementary information: of Loss of the Chr16p11.2 ASD candidate gene QPRT leads to aberrant neuronal differentiation in the SH-SY5Y neuronal cell model

Abstract

Extracted data

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