Additional file 1: Tables S1âS9. of Significant transcriptional changes in 15q duplication but not Angelman syndrome deletion stem cell-derived neurons

Additional file 8: Table S4. of Human induced pluripotent stem cell derived neurons as a model for Williams-Beuren syndrome

Shahryar Khattak (291870)
Elise Brimble (506600)
Wenbo Zhang (498386)
Kirill Zaslavsky (3526682)
Emma Strong (3526676)
P. Ross (3526670)
Jason Hendry (3526673)
Seema Mital (248308)
Michael Salter (3526679)
Lucy Osborne (433097)
James Ellis (43923)

November 2015

Detailed tables for the top 20 negatively and positively enriched gene sets, sorted in order of decr...

Additional file 1: of Role of miR-146a in neural stem cell differentiation and neural lineage determination: relevance for neurodevelopmental disorders

Lam Nguyen (799184)
Julien Fregeac (3458822)
Christine Bole-Feysot (182)
Nicolas Cagnard (169832)
Anand Iyer (135705)
Jasper Anink (3427148)
Eleonora Aronica (135729)
Olivier Alibeu (5424548)
Patrick Nitschke (526224)
Laurence Colleaux (3458834)

June 2018

Table S1. Detailed information of all patients and controls whose brain samples were used in this st...

Additional file 2: of Burden of de novo mutations and inherited rare single nucleotide variants in children with sensory processing dysfunction

Elysa Marco (5290844)
Anne Aitken (5290841)
Vishnu Nair (5290850)
Gilberto da Gente (5290859)
Molly Gerdes (5290856)
Leyla Bologlu (5290847)
Sean Thomas (75243)
Elliott Sherr (5290853)

May 2018

Moderate- Probability Risk ASD Gene Set. Table of 292 genes from AutDB categorized as possibly damag...

Additional file 1:Â Supplementary information: of Loss of the Chr16p11.2 ASD candidate gene QPRT leads to aberrant neuronal differentiation in the SH-SY5Y neuronal cell model

Denise Haslinger (5940275)
Regina Waltes (184878)
Afsheen Yousaf (5940278)
Silvia Lindlar (5940281)
Ines Schneider (5940284)
Chai Lim (1783117)
Meng-Miao Tsai (5940287)
Boyan Garvalov (5940290)
Amparo Acker-Palmer (3173001)
Nicolas Krezdorn (2573719)
BjĂśrn Rotter (5162456)
Till Acker (4091635)
Gilles Guillemin (3523148)
Simone Fulda (106002)
Christine Freitag (314982)
Andreas Chiocchetti (184869)

November 2018

Supplementary methods, supplementary results, supplementary table S1, supplementary figures S1-S6. (...

Additional file 2:Â Supplementary table S2. of Loss of the Chr16p11.2 ASD candidate gene QPRT leads to aberrant neuronal differentiation in the SH-SY5Y neuronal cell model

Denise Haslinger (5940275)
Regina Waltes (184878)
Afsheen Yousaf (5940278)
Silvia Lindlar (5940281)
Ines Schneider (5940284)
Chai Lim (1783117)
Meng-Miao Tsai (5940287)
Boyan Garvalov (5940290)
Amparo Acker-Palmer (3173001)
Nicolas Krezdorn (2573719)
BjĂśrn Rotter (5162456)
Till Acker (4091635)
Gilles Guillemin (3523148)
Simone Fulda (106002)
Christine Freitag (314982)
Andreas Chiocchetti (184869)

November 2018

Results from DESeq2 analysis and count data from RNA-Seq (MACE analysis).Â (XLSX 5308 kb

Significant transcriptional changes in 15q duplication but not Angelman syndrome deletion stem cell-derived neurons

Nora Urraca
Kevin Hope
A. Kaitlyn Victor
T. Grant Belgard
Rawaha Memon
Sarita Goorha
Colleen Valdez
Quynh T. Tran
Silvia Sanchez
Juanma Ramirez
Martin Donaldson
Dave Bridges
Lawrence T. Reiter

January 2018

Abstract Background The inability to analyze gene expression in living neurons from Angelman (AS) an...

Additional file 9: Table S5. of Human induced pluripotent stem cell derived neurons as a model for Williams-Beuren syndrome

Shahryar Khattak (291870)
Elise Brimble (506600)
Wenbo Zhang (498386)
Kirill Zaslavsky (3526682)
Emma Strong (3526676)
P. Ross (3526670)
Jason Hendry (3526673)
Seema Mital (248308)
Michael Salter (3526679)
Lucy Osborne (433097)
James Ellis (43923)

November 2015

Table of differentially expressed genes used for ranking genes for GSEA. (XLS 4906Â kb

Additional file 9: of CRISPR/Cas9-mediated heterozygous knockout of the autism gene CHD8 and characterization of its transcriptional networks in neurodevelopment

Ping Wang (42415)
Mingyan Lin (139065)
Erika Pedrosa (139072)
Anastasia Hrabovsky (139067)
Zheng Zhang (88857)
Wenjun Guo (3505481)
Herbert Lachman (3505484)
Deyou Zheng (7943)

October 2015

Table S8. GO analysis (ClueGO) of DEGs in each of five DEG lists from CHD8 +/â or knockdown analys...

Additional file 3: of Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer

Jaume Forés-Martos (3905047)
Ferrán Catalá-López (321247)
Jon Sánchez-Valle (6566402)
Kristina Ibáñez (525033)
Héctor Tejero (177113)
Helena Palma-Gudiel (5993483)
Joan Climent (6566405)
Vera Pancaldi (3484688)
Lourdes Fañanás (623342)
Celso Arango (2937681)
Mara Parellada (839497)
Anaïs Baudot (6303)
Daniel Vogt (408869)
John Rubenstein (5750219)
Alfonso Valencia (1343)
Rafael Tabarés-Seisdedos (525034)

April 2019

Full ASD GSEA pre-ranked enrichment results for different molecular signatures (C2, H, GO_BP, GO_CC,...

Additional file 5: Table S1. of Human induced pluripotent stem cell derived neurons as a model for Williams-Beuren syndrome

Shahryar Khattak (291870)
Elise Brimble (506600)
Wenbo Zhang (498386)
Kirill Zaslavsky (3526682)
Emma Strong (3526676)
P. Ross (3526670)
Jason Hendry (3526673)
Seema Mital (248308)
Michael Salter (3526679)
Lucy Osborne (433097)
James Ellis (43923)

November 2015

Primers used for quantitative real-time PCR validation of differentially expressed genes. (XLSX 54Â ...

Additional file 1: of Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer

Jaume Forés-Martos (3905047)
Ferrán Catalá-López (321247)
Jon Sánchez-Valle (6566402)
Kristina Ibáñez (525033)
Héctor Tejero (177113)
Helena Palma-Gudiel (5993483)
Joan Climent (6566405)
Vera Pancaldi (3484688)
Lourdes Fañanás (623342)
Celso Arango (2937681)
Mara Parellada (839497)
Anaïs Baudot (6303)
Daniel Vogt (408869)
John Rubenstein (5750219)
Alfonso Valencia (1343)
Rafael Tabarés-Seisdedos (525034)

April 2019

Table S1. Datasets included in our study. Table S2. Age, gender and pmi distributions between cases ...

Additional file 1: of Burden of de novo mutations and inherited rare single nucleotide variants in children with sensory processing dysfunction

Elysa Marco (5290844)
Anne Aitken (5290841)
Vishnu Nair (5290850)
Gilberto da Gente (5290859)
Molly Gerdes (5290856)
Leyla Bologlu (5290847)
Sean Thomas (75243)
Elliott Sherr (5290853)

May 2018

High- Probability Risk ASD Gene Set. Table of seventy-six genes from AutDB determined to be âproba...

Additional file 4: of Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer

Jaume Forés-Martos (3905047)
Ferrán Catalá-López (321247)
Jon Sánchez-Valle (6566402)
Kristina Ibáñez (525033)
Héctor Tejero (177113)
Helena Palma-Gudiel (5993483)
Joan Climent (6566405)
Vera Pancaldi (3484688)
Lourdes Fañanás (623342)
Celso Arango (2937681)
Mara Parellada (839497)
Anaïs Baudot (6303)
Daniel Vogt (408869)
John Rubenstein (5750219)
Alfonso Valencia (1343)
Rafael Tabarés-Seisdedos (525034)

April 2019

gProfileR biological process overrepresentation results of the genes contained in the significant in...

Additional file 1: of NSDHL-containing duplication at Xq28 in a male patient with autism spectrum disorder: a case report

Chun-Chun Hu (5913773)
Yun-Jun Sun (5913776)
Chun-xue Liu (5049650)
Bing-rui Zhou (5913779)
Chun-yang Li (5049653)
Qiong Xu (204847)
Xiu Xu (498635)

October 2018

Table S1. Results showing the Swanson Nolan and Pelham, Version IV (SNAP-IV), Autism Diagnostic Obse...

Additional file 10: of CRISPR/Cas9-mediated heterozygous knockout of the autism gene CHD8 and characterization of its transcriptional networks in neurodevelopment

Ping Wang (42415)
Mingyan Lin (139065)
Erika Pedrosa (139072)
Anastasia Hrabovsky (139067)
Zheng Zhang (88857)
Wenjun Guo (3505481)
Herbert Lachman (3505484)
Deyou Zheng (7943)

October 2015

Table S9âS10. Numbers and putative functionally disrupted coding variants in the WT iPSC line. (PD...

Additional file 8: Table S4. of Human induced pluripotent stem cell derived neurons as a model for Williams-Beuren syndrome

Shahryar Khattak (291870)
Elise Brimble (506600)
Wenbo Zhang (498386)
Kirill Zaslavsky (3526682)
Emma Strong (3526676)
P. Ross (3526670)
Jason Hendry (3526673)
Seema Mital (248308)
Michael Salter (3526679)
Lucy Osborne (433097)
James Ellis (43923)

November 2015

Detailed tables for the top 20 negatively and positively enriched gene sets, sorted in order of decr...

Additional file 1: of Role of miR-146a in neural stem cell differentiation and neural lineage determination: relevance for neurodevelopmental disorders

Lam Nguyen (799184)
Julien Fregeac (3458822)
Christine Bole-Feysot (182)
Nicolas Cagnard (169832)
Anand Iyer (135705)
Jasper Anink (3427148)
Eleonora Aronica (135729)
Olivier Alibeu (5424548)
Patrick Nitschke (526224)
Laurence Colleaux (3458834)

June 2018

Table S1. Detailed information of all patients and controls whose brain samples were used in this st...

Additional file 2: of Burden of de novo mutations and inherited rare single nucleotide variants in children with sensory processing dysfunction

Elysa Marco (5290844)
Anne Aitken (5290841)
Vishnu Nair (5290850)
Gilberto da Gente (5290859)
Molly Gerdes (5290856)
Leyla Bologlu (5290847)
Sean Thomas (75243)
Elliott Sherr (5290853)

May 2018

Moderate- Probability Risk ASD Gene Set. Table of 292 genes from AutDB categorized as possibly damag...

Additional file 1:Â Supplementary information: of Loss of the Chr16p11.2 ASD candidate gene QPRT leads to aberrant neuronal differentiation in the SH-SY5Y neuronal cell model

Denise Haslinger (5940275)
Regina Waltes (184878)
Afsheen Yousaf (5940278)
Silvia Lindlar (5940281)
Ines Schneider (5940284)
Chai Lim (1783117)
Meng-Miao Tsai (5940287)
Boyan Garvalov (5940290)
Amparo Acker-Palmer (3173001)
Nicolas Krezdorn (2573719)
BjĂśrn Rotter (5162456)
Till Acker (4091635)
Gilles Guillemin (3523148)
Simone Fulda (106002)
Christine Freitag (314982)
Andreas Chiocchetti (184869)

November 2018

Supplementary methods, supplementary results, supplementary table S1, supplementary figures S1-S6. (...

Additional file 2:Â Supplementary table S2. of Loss of the Chr16p11.2 ASD candidate gene QPRT leads to aberrant neuronal differentiation in the SH-SY5Y neuronal cell model

Denise Haslinger (5940275)
Regina Waltes (184878)
Afsheen Yousaf (5940278)
Silvia Lindlar (5940281)
Ines Schneider (5940284)
Chai Lim (1783117)
Meng-Miao Tsai (5940287)
Boyan Garvalov (5940290)
Amparo Acker-Palmer (3173001)
Nicolas Krezdorn (2573719)
BjĂśrn Rotter (5162456)
Till Acker (4091635)
Gilles Guillemin (3523148)
Simone Fulda (106002)
Christine Freitag (314982)
Andreas Chiocchetti (184869)

November 2018

Results from DESeq2 analysis and count data from RNA-Seq (MACE analysis).Â (XLSX 5308 kb

Significant transcriptional changes in 15q duplication but not Angelman syndrome deletion stem cell-derived neurons

Nora Urraca
Kevin Hope
A. Kaitlyn Victor
T. Grant Belgard
Rawaha Memon
Sarita Goorha
Colleen Valdez
Quynh T. Tran
Silvia Sanchez
Juanma Ramirez
Martin Donaldson
Dave Bridges
Lawrence T. Reiter

January 2018

Abstract Background The inability to analyze gene expression in living neurons from Angelman (AS) an...

Additional file 9: Table S5. of Human induced pluripotent stem cell derived neurons as a model for Williams-Beuren syndrome

Shahryar Khattak (291870)
Elise Brimble (506600)
Wenbo Zhang (498386)
Kirill Zaslavsky (3526682)
Emma Strong (3526676)
P. Ross (3526670)
Jason Hendry (3526673)
Seema Mital (248308)
Michael Salter (3526679)
Lucy Osborne (433097)
James Ellis (43923)

November 2015

Table of differentially expressed genes used for ranking genes for GSEA. (XLS 4906Â kb

Additional file 9: of CRISPR/Cas9-mediated heterozygous knockout of the autism gene CHD8 and characterization of its transcriptional networks in neurodevelopment

Ping Wang (42415)
Mingyan Lin (139065)
Erika Pedrosa (139072)
Anastasia Hrabovsky (139067)
Zheng Zhang (88857)
Wenjun Guo (3505481)
Herbert Lachman (3505484)
Deyou Zheng (7943)

October 2015

Table S8. GO analysis (ClueGO) of DEGs in each of five DEG lists from CHD8 +/â or knockdown analys...

Additional file 3: of Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer

Jaume Forés-Martos (3905047)
Ferrán Catalá-López (321247)
Jon Sánchez-Valle (6566402)
Kristina Ibáñez (525033)
Héctor Tejero (177113)
Helena Palma-Gudiel (5993483)
Joan Climent (6566405)
Vera Pancaldi (3484688)
Lourdes Fañanás (623342)
Celso Arango (2937681)
Mara Parellada (839497)
Anaïs Baudot (6303)
Daniel Vogt (408869)
John Rubenstein (5750219)
Alfonso Valencia (1343)
Rafael Tabarés-Seisdedos (525034)

April 2019

Full ASD GSEA pre-ranked enrichment results for different molecular signatures (C2, H, GO_BP, GO_CC,...

Additional file 5: Table S1. of Human induced pluripotent stem cell derived neurons as a model for Williams-Beuren syndrome

Shahryar Khattak (291870)
Elise Brimble (506600)
Wenbo Zhang (498386)
Kirill Zaslavsky (3526682)
Emma Strong (3526676)
P. Ross (3526670)
Jason Hendry (3526673)
Seema Mital (248308)
Michael Salter (3526679)
Lucy Osborne (433097)
James Ellis (43923)

November 2015

Primers used for quantitative real-time PCR validation of differentially expressed genes. (XLSX 54Â ...

Additional file 1: of Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer

Jaume Forés-Martos (3905047)
Ferrán Catalá-López (321247)
Jon Sánchez-Valle (6566402)
Kristina Ibáñez (525033)
Héctor Tejero (177113)
Helena Palma-Gudiel (5993483)
Joan Climent (6566405)
Vera Pancaldi (3484688)
Lourdes Fañanás (623342)
Celso Arango (2937681)
Mara Parellada (839497)
Anaïs Baudot (6303)
Daniel Vogt (408869)
John Rubenstein (5750219)
Alfonso Valencia (1343)
Rafael Tabarés-Seisdedos (525034)

April 2019

Table S1. Datasets included in our study. Table S2. Age, gender and pmi distributions between cases ...

Additional file 1: of Burden of de novo mutations and inherited rare single nucleotide variants in children with sensory processing dysfunction

Elysa Marco (5290844)
Anne Aitken (5290841)
Vishnu Nair (5290850)
Gilberto da Gente (5290859)
Molly Gerdes (5290856)
Leyla Bologlu (5290847)
Sean Thomas (75243)
Elliott Sherr (5290853)

May 2018

High- Probability Risk ASD Gene Set. Table of seventy-six genes from AutDB determined to be âproba...

Additional file 4: of Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer

Jaume Forés-Martos (3905047)
Ferrán Catalá-López (321247)
Jon Sánchez-Valle (6566402)
Kristina Ibáñez (525033)
Héctor Tejero (177113)
Helena Palma-Gudiel (5993483)
Joan Climent (6566405)
Vera Pancaldi (3484688)
Lourdes Fañanás (623342)
Celso Arango (2937681)
Mara Parellada (839497)
Anaïs Baudot (6303)
Daniel Vogt (408869)
John Rubenstein (5750219)
Alfonso Valencia (1343)
Rafael Tabarés-Seisdedos (525034)

April 2019

gProfileR biological process overrepresentation results of the genes contained in the significant in...

Additional file 1: of NSDHL-containing duplication at Xq28 in a male patient with autism spectrum disorder: a case report

Chun-Chun Hu (5913773)
Yun-Jun Sun (5913776)
Chun-xue Liu (5049650)
Bing-rui Zhou (5913779)
Chun-yang Li (5049653)
Qiong Xu (204847)
Xiu Xu (498635)

October 2018

Table S1. Results showing the Swanson Nolan and Pelham, Version IV (SNAP-IV), Autism Diagnostic Obse...

Additional file 10: of CRISPR/Cas9-mediated heterozygous knockout of the autism gene CHD8 and characterization of its transcriptional networks in neurodevelopment

Ping Wang (42415)
Mingyan Lin (139065)
Erika Pedrosa (139072)
Anastasia Hrabovsky (139067)
Zheng Zhang (88857)
Wenjun Guo (3505481)
Herbert Lachman (3505484)
Deyou Zheng (7943)

October 2015

Table S9âS10. Numbers and putative functionally disrupted coding variants in the WT iPSC line. (PD...

Additional file 8: Table S4. of Human induced pluripotent stem cell derived neurons as a model for Williams-Beuren syndrome

Shahryar Khattak (291870)
Elise Brimble (506600)
Wenbo Zhang (498386)
Kirill Zaslavsky (3526682)
Emma Strong (3526676)
P. Ross (3526670)
Jason Hendry (3526673)
Seema Mital (248308)
Michael Salter (3526679)
Lucy Osborne (433097)
James Ellis (43923)

November 2015

Detailed tables for the top 20 negatively and positively enriched gene sets, sorted in order of decr...

Additional file 1: of Role of miR-146a in neural stem cell differentiation and neural lineage determination: relevance for neurodevelopmental disorders

Lam Nguyen (799184)
Julien Fregeac (3458822)
Christine Bole-Feysot (182)
Nicolas Cagnard (169832)
Anand Iyer (135705)
Jasper Anink (3427148)
Eleonora Aronica (135729)
Olivier Alibeu (5424548)
Patrick Nitschke (526224)
Laurence Colleaux (3458834)

June 2018

Table S1. Detailed information of all patients and controls whose brain samples were used in this st...

Additional file 2: of Burden of de novo mutations and inherited rare single nucleotide variants in children with sensory processing dysfunction

Elysa Marco (5290844)
Anne Aitken (5290841)
Vishnu Nair (5290850)
Gilberto da Gente (5290859)
Molly Gerdes (5290856)
Leyla Bologlu (5290847)
Sean Thomas (75243)
Elliott Sherr (5290853)

May 2018

Moderate- Probability Risk ASD Gene Set. Table of 292 genes from AutDB categorized as possibly damag...

Additional file 1: Tables S1âS9. of Significant transcriptional changes in 15q duplication but not Angelman syndrome deletion stem cell-derived neurons

Abstract

Extracted data

Additional file 1: Tables S1âS9. of Significant transcriptional changes in 15q duplication but not Angelman syndrome deletion stem cell-derived neurons

Abstract

Extracted data

Related items

Related items

Additional file 1: Tables S1âS9. of Significant transcriptional changes in 15q duplication but not Angelman syndrome deletion stem cell-derived neurons

Abstract

Extracted data

Additional file 1: Tables S1âS9. of Significant transcriptional changes in 15q duplication but not Angelman syndrome deletion stem cell-derived neurons

Abstract

Extracted data

Related items

Related items

Additional file 1: Tables S1âS9. of Significant transcriptional changes in 15q duplication but not Angelman syndrome deletion stem cell-derived neurons

Additional file 1: Tables S1âS9. of Significant transcriptional changes in 15q duplication but not Angelman syndrome deletion stem cell-derived neurons