Additional file 8: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Additional file 4: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelรถnn (6206783)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Kรถhn (6206786)
Bรถrje Ljungberg (6206789)
Gรถran Roos (6206792)
Sofie Degerman (419239)

January 2019

Table S2. Comparison of CNV results gained from HumanMethylation450K and HumanCytoSNP-12 arrays in 5...

Additional file 9: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelönn (6206777)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Köhn (6206780)
Börje Ljungberg (72551)
Göran Roos (285532)
Sofie Degerman (419239)

January 2019

Table S5. Cox’s proportional hazard regression analysis for progress free survival (PFS) in 87 M0 cc...

Additional file 4: of Inactivation of the tight junction gene CLDN11 by aberrant hypermethylation modulates tubulins polymerization and promotes cell migration in nasopharyngeal carcinoma

Hsin-Pai Li (5205974)
Chen-Ching Peng (5205980)
Chih-Ching Wu (165883)
Chien-Hsun Chen (644090)
Meng-Jhe Shih (5205977)
Mei-Yuan Huang (5205971)
Yi-Ru Lai (5205968)
Yung-Li Chen (5205983)
Ting-Wen Chen (3574655)
Petrus Tang (8798)
Yu-Sun Chang (144676)
Kai-Ping Chang (144672)
Cheng-Lung Hsu (488427)

May 2018

Figure S2. Immunohistochemistry staining analysis of CLDN11 in nine paired NPC tissues with higher m...

Additional file 5: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Figure S2. Six DNA methylation sites of CLDN7 promoter that not significantly hypermethylated in TCG...

Additional file 7: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Table S4. Correlation between CLDN7 promoter DNA methylation site (cg00072720) and clinicopathologic...

Additional file 9: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Figure S5. Gene-set enrichment analysis is used to identify the pathways in two different CLDN7 mRNA...

Additional file 10: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Table S5. Gene-set enrichment analysis between high- and low- CLDN7 group in Kidney clear cell carci...

Additional file 4: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Table S3. Correlation between CLDN7 expression and 653 clinicopathological features in 534 ccRCC pat...

Additional file 1: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Table S1. The clinicopathological features of 120 ccRCC patients from Peking University First Hospit...

Additional file 6: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelönn (6206777)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Köhn (6206780)
Börje Ljungberg (72551)
Göran Roos (285532)
Sofie Degerman (419239)

January 2019

Figure S4. Distribution of hyper- and hypomethylated CpGs in patients with or without specific genom...

Additional file 5: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelรถnn (6206783)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Kรถhn (6206786)
Bรถrje Ljungberg (6206789)
Gรถran Roos (6206792)
Sofie Degerman (419239)

January 2019

Figure S2. Copy number variation (CNV) analysis. CNV analysis of twelve chromosome regions previousl...

Additional file 11: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelรถnn (6206783)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Kรถhn (6206786)
Bรถrje Ljungberg (6206789)
Gรถran Roos (6206792)
Sofie Degerman (419239)

January 2019

Figure S5. Correlations between number of hypomethylated CpGs and number of genetic aberrations and ...

Additional file 7: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelรถnn (6206783)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Kรถhn (6206786)
Bรถrje Ljungberg (6206789)
Gรถran Roos (6206792)
Sofie Degerman (419239)

January 2019

Table S8. Top 20 most significant GO Terms for GeneIDs either hyper- or hypomethylated in M0-P and M...

Additional file 8: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelönn (6206777)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Köhn (6206780)
Börje Ljungberg (72551)
Göran Roos (285532)
Sofie Degerman (419239)

January 2019

Table S4. Cox’s proportional hazard regression analysis for cancer specific survival (CSS) in 115 cc...

Additional file 3: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelรถnn (6206783)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Kรถhn (6206786)
Bรถrje Ljungberg (6206789)
Gรถran Roos (6206792)
Sofie Degerman (419239)

January 2019

Figure S1. Single nucleotide polymorphism (SNP) analysis. SNP analysis of 65 genotyping probes on th...

Additional file 4: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelรถnn (6206783)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Kรถhn (6206786)
Bรถrje Ljungberg (6206789)
Gรถran Roos (6206792)
Sofie Degerman (419239)

January 2019

Table S2. Comparison of CNV results gained from HumanMethylation450K and HumanCytoSNP-12 arrays in 5...

Additional file 9: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelönn (6206777)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Köhn (6206780)
Börje Ljungberg (72551)
Göran Roos (285532)
Sofie Degerman (419239)

January 2019

Table S5. Cox’s proportional hazard regression analysis for progress free survival (PFS) in 87 M0 cc...

Additional file 4: of Inactivation of the tight junction gene CLDN11 by aberrant hypermethylation modulates tubulins polymerization and promotes cell migration in nasopharyngeal carcinoma

Hsin-Pai Li (5205974)
Chen-Ching Peng (5205980)
Chih-Ching Wu (165883)
Chien-Hsun Chen (644090)
Meng-Jhe Shih (5205977)
Mei-Yuan Huang (5205971)
Yi-Ru Lai (5205968)
Yung-Li Chen (5205983)
Ting-Wen Chen (3574655)
Petrus Tang (8798)
Yu-Sun Chang (144676)
Kai-Ping Chang (144672)
Cheng-Lung Hsu (488427)

May 2018

Figure S2. Immunohistochemistry staining analysis of CLDN11 in nine paired NPC tissues with higher m...

Additional file 5: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Figure S2. Six DNA methylation sites of CLDN7 promoter that not significantly hypermethylated in TCG...

Additional file 7: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Table S4. Correlation between CLDN7 promoter DNA methylation site (cg00072720) and clinicopathologic...

Additional file 9: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Figure S5. Gene-set enrichment analysis is used to identify the pathways in two different CLDN7 mRNA...

Additional file 10: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Table S5. Gene-set enrichment analysis between high- and low- CLDN7 group in Kidney clear cell carci...

Additional file 4: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Table S3. Correlation between CLDN7 expression and 653 clinicopathological features in 534 ccRCC pat...

Additional file 1: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Table S1. The clinicopathological features of 120 ccRCC patients from Peking University First Hospit...

Additional file 6: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelönn (6206777)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Köhn (6206780)
Börje Ljungberg (72551)
Göran Roos (285532)
Sofie Degerman (419239)

January 2019

Figure S4. Distribution of hyper- and hypomethylated CpGs in patients with or without specific genom...

Additional file 5: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelรถnn (6206783)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Kรถhn (6206786)
Bรถrje Ljungberg (6206789)
Gรถran Roos (6206792)
Sofie Degerman (419239)

January 2019

Figure S2. Copy number variation (CNV) analysis. CNV analysis of twelve chromosome regions previousl...

Additional file 11: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelรถnn (6206783)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Kรถhn (6206786)
Bรถrje Ljungberg (6206789)
Gรถran Roos (6206792)
Sofie Degerman (419239)

January 2019

Figure S5. Correlations between number of hypomethylated CpGs and number of genetic aberrations and ...

Additional file 7: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelรถnn (6206783)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Kรถhn (6206786)
Bรถrje Ljungberg (6206789)
Gรถran Roos (6206792)
Sofie Degerman (419239)

January 2019

Table S8. Top 20 most significant GO Terms for GeneIDs either hyper- or hypomethylated in M0-P and M...

Additional file 8: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelönn (6206777)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Köhn (6206780)
Börje Ljungberg (72551)
Göran Roos (285532)
Sofie Degerman (419239)

January 2019

Table S4. Cox’s proportional hazard regression analysis for cancer specific survival (CSS) in 115 cc...

Additional file 3: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelรถnn (6206783)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Kรถhn (6206786)
Bรถrje Ljungberg (6206789)
Gรถran Roos (6206792)
Sofie Degerman (419239)

January 2019

Figure S1. Single nucleotide polymorphism (SNP) analysis. SNP analysis of 65 genotyping probes on th...

Additional file 4: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelรถnn (6206783)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Kรถhn (6206786)
Bรถrje Ljungberg (6206789)
Gรถran Roos (6206792)
Sofie Degerman (419239)

January 2019

Table S2. Comparison of CNV results gained from HumanMethylation450K and HumanCytoSNP-12 arrays in 5...

Additional file 9: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelönn (6206777)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Köhn (6206780)
Börje Ljungberg (72551)
Göran Roos (285532)
Sofie Degerman (419239)

January 2019

Table S5. Cox’s proportional hazard regression analysis for progress free survival (PFS) in 87 M0 cc...

Additional file 4: of Inactivation of the tight junction gene CLDN11 by aberrant hypermethylation modulates tubulins polymerization and promotes cell migration in nasopharyngeal carcinoma

Hsin-Pai Li (5205974)
Chen-Ching Peng (5205980)
Chih-Ching Wu (165883)
Chien-Hsun Chen (644090)
Meng-Jhe Shih (5205977)
Mei-Yuan Huang (5205971)
Yi-Ru Lai (5205968)
Yung-Li Chen (5205983)
Ting-Wen Chen (3574655)
Petrus Tang (8798)
Yu-Sun Chang (144676)
Kai-Ping Chang (144672)
Cheng-Lung Hsu (488427)

May 2018

Figure S2. Immunohistochemistry staining analysis of CLDN11 in nine paired NPC tissues with higher m...

Additional file 8: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Abstract

Extracted data

Additional file 8: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Abstract

Extracted data

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