Additional file 9: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

Publication date

November 2018

DOI

10.6084/m9.figshare.7345829.v1

Abstract

Figure S5. Gene-set enrichment analysis is used to identify the pathways in two different CLDN7 mRNA level groups. (JPG 2095 kb

Extracted data

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Additional file 9: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

Open link

Publication date

November 2018

DOI

10.6084/m9.figshare.7345829.v1

Abstract

Figure S5. Gene-set enrichment analysis is used to identify the pathways in two different CLDN7 mRNA level groups. (JPG 2095 kb

Extracted data

Ahrim Youn (4606252)
Kyung In Kim (47502)
Raul Rabadan (88130)
Benjamin Tycko (237065)
Yufeng Shen (239573)
Shuang Wang (46453)

November 2018

Table S7. Chromatin regulators dysregulated by IDH1 and CIC in LGG. |Ti| is number of tumor types wh...

Additional file 1: of Lnc-PDZD7 contributes to stemness properties and chemosensitivity in hepatocellular carcinoma through EZH2-mediated ATOH8 transcriptional repression

Yi Zhang (9093)
Bo Tang (23472)
Jun Song (19318)
Shuiping Yu (3575978)
Yang Li (7082)
Huizhao Su (6188948)
Songqing He (492664)

February 2019

Figure S1. Heatmap representation of 26 upregulated lncRNAs in HCC tissues compared to para-tumorous...

Additional file 1: of Cyclin D1 as a therapeutic target of renal cell carcinoma- a combined transcriptomics, tissue microarray and molecular docking study from the Kingdom of Saudi Arabia

Sajjad Karim (706052)
Jaudah Al-Maghrabi (2620867)
Hasan Farsi (3449576)
Ahmad Al-Sayyad (3449567)
Hans-Juergen Schulten (706046)
Abdelbaset Buhmeida (3433826)
Zeenat Mirza (706045)
Alaa Al-boogmi (3449570)
Fai Ashgan (3449564)
Manal Shabaad (3449573)
Hend NourEldin (3449561)
Khalid Al-Ghamdi (3449579)
Adel Abuzenadah (3149340)
Adeel Chaudhary (2620876)
Mohammed Al-Qahtani (2620849)

September 2016

Differentially expressed genes of RCC from Saudi patients on comparing RCC with normal kidney tissue...

Additional file 10: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Table S5. Gene-set enrichment analysis between high- and low- CLDN7 group in Kidney clear cell carci...

Additional file 5: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Figure S2. Six DNA methylation sites of CLDN7 promoter that not significantly hypermethylated in TCG...

Additional file 8: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Figure S4. The CLDN7 promoter DNA methylation site, cg00072720, was associated with poor overall sur...

Additional file 4: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Table S3. Correlation between CLDN7 expression and 653 clinicopathological features in 534 ccRCC pat...

Additional file 7: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Table S4. Correlation between CLDN7 promoter DNA methylation site (cg00072720) and clinicopathologic...

Additional file 1: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Table S1. The clinicopathological features of 120 ccRCC patients from Peking University First Hospit...

Additional file 4: of Inactivation of the tight junction gene CLDN11 by aberrant hypermethylation modulates tubulins polymerization and promotes cell migration in nasopharyngeal carcinoma

Hsin-Pai Li (5205974)
Chen-Ching Peng (5205980)
Chih-Ching Wu (165883)
Chien-Hsun Chen (644090)
Meng-Jhe Shih (5205977)
Mei-Yuan Huang (5205971)
Yi-Ru Lai (5205968)
Yung-Li Chen (5205983)
Ting-Wen Chen (3574655)
Petrus Tang (8798)
Yu-Sun Chang (144676)
Kai-Ping Chang (144672)
Cheng-Lung Hsu (488427)

May 2018

Figure S2. Immunohistochemistry staining analysis of CLDN11 in nine paired NPC tissues with higher m...

Additional file 5: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelรถnn (6206783)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Kรถhn (6206786)
Bรถrje Ljungberg (6206789)
Gรถran Roos (6206792)
Sofie Degerman (419239)

January 2019

Figure S2. Copy number variation (CNV) analysis. CNV analysis of twelve chromosome regions previousl...

Additional file 11: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelรถnn (6206783)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Kรถhn (6206786)
Bรถrje Ljungberg (6206789)
Gรถran Roos (6206792)
Sofie Degerman (419239)

January 2019

Figure S5. Correlations between number of hypomethylated CpGs and number of genetic aberrations and ...

Additional file 1: of Overexpression of CLC-3 is regulated by XRCC5 and is a poor prognostic biomarker for gastric cancer

Zhuoyu Gu (5750051)
Yixin Li (1540552)
Xiaoya Yang (2570020)
Meisheng Yu (5750054)
Zhanru Chen (5750057)
Chan Zhao (5538923)
Lixin Chen (300749)
Liwei Wang (165815)

September 2018

Table S1. The truncated promoter regions of CLC-3 were designed with primer pairs as follows. (DOCX ...

Ahrim Youn (4606252)
Kyung In Kim (47502)
Raul Rabadan (88130)
Benjamin Tycko (237065)
Yufeng Shen (239573)
Shuang Wang (46453)

November 2018

Table S7. Chromatin regulators dysregulated by IDH1 and CIC in LGG. |Ti| is number of tumor types wh...

Additional file 1: of Lnc-PDZD7 contributes to stemness properties and chemosensitivity in hepatocellular carcinoma through EZH2-mediated ATOH8 transcriptional repression

Yi Zhang (9093)
Bo Tang (23472)
Jun Song (19318)
Shuiping Yu (3575978)
Yang Li (7082)
Huizhao Su (6188948)
Songqing He (492664)

February 2019

Figure S1. Heatmap representation of 26 upregulated lncRNAs in HCC tissues compared to para-tumorous...

Additional file 1: of Cyclin D1 as a therapeutic target of renal cell carcinoma- a combined transcriptomics, tissue microarray and molecular docking study from the Kingdom of Saudi Arabia

Sajjad Karim (706052)
Jaudah Al-Maghrabi (2620867)
Hasan Farsi (3449576)
Ahmad Al-Sayyad (3449567)
Hans-Juergen Schulten (706046)
Abdelbaset Buhmeida (3433826)
Zeenat Mirza (706045)
Alaa Al-boogmi (3449570)
Fai Ashgan (3449564)
Manal Shabaad (3449573)
Hend NourEldin (3449561)
Khalid Al-Ghamdi (3449579)
Adel Abuzenadah (3149340)
Adeel Chaudhary (2620876)
Mohammed Al-Qahtani (2620849)

September 2016

Differentially expressed genes of RCC from Saudi patients on comparing RCC with normal kidney tissue...

Additional file 10: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Table S5. Gene-set enrichment analysis between high- and low- CLDN7 group in Kidney clear cell carci...

Additional file 5: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Figure S2. Six DNA methylation sites of CLDN7 promoter that not significantly hypermethylated in TCG...

Additional file 8: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Figure S4. The CLDN7 promoter DNA methylation site, cg00072720, was associated with poor overall sur...

Additional file 4: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Table S3. Correlation between CLDN7 expression and 653 clinicopathological features in 534 ccRCC pat...

Additional file 7: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Table S4. Correlation between CLDN7 promoter DNA methylation site (cg00072720) and clinicopathologic...

Additional file 1: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Yifan Li (327507)
Yanqing Gong (690335)
Xianghui Ning (307339)
Ding Peng (4629238)
Libo Liu (552605)
Shiming He (5515025)
Kan Gong (307341)
Cuijian Zhang (5515019)
Xuesong Li (291235)
Liqun Zhou (468915)

November 2018

Table S1. The clinicopathological features of 120 ccRCC patients from Peking University First Hospit...

Additional file 4: of Inactivation of the tight junction gene CLDN11 by aberrant hypermethylation modulates tubulins polymerization and promotes cell migration in nasopharyngeal carcinoma

Hsin-Pai Li (5205974)
Chen-Ching Peng (5205980)
Chih-Ching Wu (165883)
Chien-Hsun Chen (644090)
Meng-Jhe Shih (5205977)
Mei-Yuan Huang (5205971)
Yi-Ru Lai (5205968)
Yung-Li Chen (5205983)
Ting-Wen Chen (3574655)
Petrus Tang (8798)
Yu-Sun Chang (144676)
Kai-Ping Chang (144672)
Cheng-Lung Hsu (488427)

May 2018

Figure S2. Immunohistochemistry staining analysis of CLDN11 in nine paired NPC tissues with higher m...

Additional file 5: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelรถnn (6206783)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Kรถhn (6206786)
Bรถrje Ljungberg (6206789)
Gรถran Roos (6206792)
Sofie Degerman (419239)

January 2019

Figure S2. Copy number variation (CNV) analysis. CNV analysis of twelve chromosome regions previousl...

Additional file 11: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelรถnn (6206783)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Kรถhn (6206786)
Bรถrje Ljungberg (6206789)
Gรถran Roos (6206792)
Sofie Degerman (419239)

January 2019

Figure S5. Correlations between number of hypomethylated CpGs and number of genetic aberrations and ...

Additional file 1: of Overexpression of CLC-3 is regulated by XRCC5 and is a poor prognostic biomarker for gastric cancer

Zhuoyu Gu (5750051)
Yixin Li (1540552)
Xiaoya Yang (2570020)
Meisheng Yu (5750054)
Zhanru Chen (5750057)
Chan Zhao (5538923)
Lixin Chen (300749)
Liwei Wang (165815)

September 2018

Table S1. The truncated promoter regions of CLC-3 were designed with primer pairs as follows. (DOCX ...

Ahrim Youn (4606252)
Kyung In Kim (47502)
Raul Rabadan (88130)
Benjamin Tycko (237065)
Yufeng Shen (239573)
Shuang Wang (46453)

November 2018

Table S7. Chromatin regulators dysregulated by IDH1 and CIC in LGG. |Ti| is number of tumor types wh...

Additional file 1: of Lnc-PDZD7 contributes to stemness properties and chemosensitivity in hepatocellular carcinoma through EZH2-mediated ATOH8 transcriptional repression

Yi Zhang (9093)
Bo Tang (23472)
Jun Song (19318)
Shuiping Yu (3575978)
Yang Li (7082)
Huizhao Su (6188948)
Songqing He (492664)

February 2019

Figure S1. Heatmap representation of 26 upregulated lncRNAs in HCC tissues compared to para-tumorous...

Additional file 1: of Cyclin D1 as a therapeutic target of renal cell carcinoma- a combined transcriptomics, tissue microarray and molecular docking study from the Kingdom of Saudi Arabia

Sajjad Karim (706052)
Jaudah Al-Maghrabi (2620867)
Hasan Farsi (3449576)
Ahmad Al-Sayyad (3449567)
Hans-Juergen Schulten (706046)
Abdelbaset Buhmeida (3433826)
Zeenat Mirza (706045)
Alaa Al-boogmi (3449570)
Fai Ashgan (3449564)
Manal Shabaad (3449573)
Hend NourEldin (3449561)
Khalid Al-Ghamdi (3449579)
Adel Abuzenadah (3149340)
Adeel Chaudhary (2620876)
Mohammed Al-Qahtani (2620849)

September 2016

Differentially expressed genes of RCC from Saudi patients on comparing RCC with normal kidney tissue...

Additional file 9: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Abstract

Extracted data

Additional file 9: of Downregulation of CLDN7 due to promoter hypermethylation is associated with human clear cell renal cell carcinoma progression and poor prognosis

Abstract

Extracted data

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