Figure S5. Evolved expression changes in response to selection for increased learning ability. (a) MA plot showing differential expression between selected and control lines (log2 Fold Change), with higher values indicating increased expression in selected lines, plotted as a function of average expression (log2 CPM). (b) Volcano plot showing statistical evidence for differential expression from edgeR (âlog10 P value from likelihood ratio test) plotted as a function of differential expression. Significant transcripts identified in edgeR, PCA, or pairwise comparisons are indicated by blue squares, green triangles, and red circles, respectively. (PDF 1899âkb
Table S1. Reference sequences and names corresponding to each novel ankyrin-repeat containing Nasoni...
Gene expression cuffdiff output (gene_exp.diff) using Nasonia transcriptome annotation 1.2. This sup...
The number of non-synonymous mutations in coding regions in the evolved clones for each experimental...
Table S5. Evolved expression changes in response to selection for increased learning ability. Thirty...
Figure S4. Genes with consistently evolved expression differences as identified by three separate me...
Figure S7. Gene expression in lines selected for increased learning ability. Heatmap shows absolute ...
Figure S6. Relation between FST and expression divergence (absolute value of log2 Fold Change) for e...
Figure S3. Principal Components Analysis (PCA) of transcriptome-wide expression reveals pervasive li...
Figure S8. For two genes, alternative transcripts of the same locus have evolved opposite expression...
Figure S1. Manhattan plots of FST values for each of the four pairs of selected versus control lines...
Table S2. Allele frequencies of the 118 significantly diverged SNPs in the selection and control lin...
Table S3. Genes underlying consistently diverged SNPs. Included are genes carrying candidate SNPs in...
Figure S2. Sanger sequencing validation of five significantly diverged SNPs in coding regions (see T...
Table S1. Sequencing information for each of the eight pooled genomic DNA libraries. (XLSX 9â kb
Table S4. Sequencing information for each of the eight pooled RNA libraries. (XLSX 40â kb
Table S1. Reference sequences and names corresponding to each novel ankyrin-repeat containing Nasoni...
Gene expression cuffdiff output (gene_exp.diff) using Nasonia transcriptome annotation 1.2. This sup...
The number of non-synonymous mutations in coding regions in the evolved clones for each experimental...
Table S5. Evolved expression changes in response to selection for increased learning ability. Thirty...
Figure S4. Genes with consistently evolved expression differences as identified by three separate me...
Figure S7. Gene expression in lines selected for increased learning ability. Heatmap shows absolute ...
Figure S6. Relation between FST and expression divergence (absolute value of log2 Fold Change) for e...
Figure S3. Principal Components Analysis (PCA) of transcriptome-wide expression reveals pervasive li...
Figure S8. For two genes, alternative transcripts of the same locus have evolved opposite expression...
Figure S1. Manhattan plots of FST values for each of the four pairs of selected versus control lines...
Table S2. Allele frequencies of the 118 significantly diverged SNPs in the selection and control lin...
Table S3. Genes underlying consistently diverged SNPs. Included are genes carrying candidate SNPs in...
Figure S2. Sanger sequencing validation of five significantly diverged SNPs in coding regions (see T...
Table S1. Sequencing information for each of the eight pooled genomic DNA libraries. (XLSX 9â kb
Table S4. Sequencing information for each of the eight pooled RNA libraries. (XLSX 40â kb
Table S1. Reference sequences and names corresponding to each novel ankyrin-repeat containing Nasoni...
Gene expression cuffdiff output (gene_exp.diff) using Nasonia transcriptome annotation 1.2. This sup...
The number of non-synonymous mutations in coding regions in the evolved clones for each experimental...