Additional file 5: of A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Genome-wide association study identified novel candidate loci affecting wood formation in Norway spruce

Baison, John
Vidalis, Amaryllis
Zhou, Linghua
Chen, Zhi-Qiang
Li, Zitong
Sillanpaeae, Mikko J.
Bernhardsson, Carolina
Scofield, Douglas
Forsberg, Nils
Grahn, Thomas
Olsson, Lars
Karlsson, Bo
Wu, Harry
Ingvarsson, Pär
Lundqvist, Sven-Olof
Niittylae, Totte
Garcia-Gil, M. Rosario

January 2019

Norway spruce is a boreal forest tree species of significant ecological and economic importance. Hen...

VCF file containing information on the identified SNPs

Mukrimin, Mukrimin
Kovalchuk, Andriy
Neves, Leandro G.
Jaber, Emad H.
Haapanen, Matti
Kirst, Matias
Asiegbu, Fred O.

June 2018

The VCF file sontains information on the genetic variants (SNPs) identified by exome resequencing ge...

Genome-wide admixture in the Picea glauca x P. engelmannii hybrid zone_311SNPs

De La Torre, Amanda
Aitken, Sally

March 2014

This file contains Illumina genomic data for 311 candidate gene single nucleotide polymorphisms (SNP...

Additional file 3: of A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Aïda Azaiez (6093365)
Nathalie Pavy (20905)
Sébastien Gérardi (717955)
Jérôme Laroche (276328)
Brian Boyle (276326)
France Gagnon (73555)
Marie-Josée Mottet (3293121)
Jean Beaulieu (717956)
Jean Bousquet (20909)

December 2018

The 30 most SNPed genes among the 16,516 Picea abies genes analysed. (XLSX 15 kb

Additional file 1: of A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Aïda Azaiez (6093365)
Nathalie Pavy (20905)
Sébastien Gérardi (717955)
Jérôme Laroche (276328)
Brian Boyle (276326)
France Gagnon (73555)
Marie-Josée Mottet (3293121)
Jean Beaulieu (717956)
Jean Bousquet (20909)

December 2018

Description of the Picea abies predicted SNP resource including quality parameters. (XLSX 13017 kb

Additional file 2: of A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Aïda Azaiez (6093365)
Nathalie Pavy (20905)
Sébastien Gérardi (717955)
Jérôme Laroche (276328)
Brian Boyle (276326)
France Gagnon (73555)
Marie-Josée Mottet (3293121)
Jean Beaulieu (717956)
Jean Bousquet (20909)

December 2018

Description of Picea abies SNPs successfully genotyped with the Infinium SNP array. (XLSX 1081 kb

A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Aïda Azaiez
Nathalie Pavy
Sébastien Gérardi
Jérôme Laroche
Brian Boyle
France Gagnon
Marie-Josée Mottet
Jean Beaulieu
Jean Bousquet

December 2018

Abstract Background Norway spruce [Picea abies (L.) Karst.] is ecologically and economically one of ...

Additional file 4: of A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Aïda Azaiez (6093365)
Nathalie Pavy (20905)
Sébastien Gérardi (717955)
Jérôme Laroche (276328)
Brian Boyle (276326)
France Gagnon (73555)
Marie-Josée Mottet (3293121)
Jean Beaulieu (717956)
Jean Bousquet (20909)

December 2018

The subgraph representing the most significant GO terms found by the weighted model produced by TopG...

Development of a highly efficient 50K single nucleotide polymorphism genotyping array for the large and complex genome of Norway spruce (Picea abies L. Karst) by whole genome resequencing and its transferability to other spruce species

Bernhardsson, Carolina
Zan, Yanjun
Chen, Zhiqiang
Ingvarsson, Pär K.
Wu, Harry X.

January 2021

Norway spruce (Picea abies L. Karst) is one of the most important forest tree species with significa...

Data from: Development of highly reliable in silico SNP resource and genotyping assay from exome capture and sequencing: an example from black spruce (Picea mariana)

Bousquet, Jean
Pavy, Nathalie
Gagnon, France
Deschênes, Astrid
Boyle, Brian
Beaulieu, Jean

September 2015

Picea mariana is a widely distributed boreal conifer across Canada and the subject of advanced breed...

Data from: Detection of SNPs based on transcriptome sequencing in Norway spruce (Picea abies (L.) Karst)

Heer, Katrin
Ullrich, Kristian Karsten
Liepelt, Sascha
Rensing, Stefan Andreas
Zhou, Jiabin
Ziegenhagen, Birgit
Opgenoorth, Lars

A novel set of SNPs was derived from transcriptome data of ten Norway spruce (Picea abies) trees fro...

Additional file 1: of Exploring the genetic basis of gene transcript abundance and metabolite levels in loblolly pine (Pinus taeda L.) using association mapping and network construction

Mengmeng Lu (3830920)
Candace Seeve (5940248)
Carol Loopstra (5940251)
Konstantin Krutovsky (4724994)

November 2018

Table S1. Annotation of genes containing SNPs associated with gene expression. Table S2. Annotation ...

Leveraging breeding programs and genomic data in Norway spruce (Picea abies L. Karst) for GWAS analysis

Chen, Zhiqiang
Zan, Yanjun
Milesi, Pascal
Zhou, Linghua
Chen, Jun
Milani, Lili
Cui, BinBin
Niu, Shihui
Westin, Johan
Karlsson, Bo
Garcia Gil, Rosario
Lascoux, Martin
Wu, Harry

January 2021

BackgroundGenome-wide association studies (GWAS) identify loci underlying the variation of complex t...

Detection of SNPs based on transcriptome sequencing in Norway spruce (Picea abies (L.) Karst)

Heer, K.
Ullrich, K.
Liepelt, S.
Rensing, S.
Zhou, J.
Ziegenhagen, B.
Opgenoorth, L.

January 2016

A novel set of SNPs was derived from transcriptome data of ten Norway spruce (Picea abies) trees fro...

Genome-wide association study identified novel candidate loci affecting wood formation in Norway spruce

Baison, John
Vidalis, Amaryllis
Zhou, Linghua
Chen, Zhi-Qiang
Li, Zitong
Sillanpaeae, Mikko J.
Bernhardsson, Carolina
Scofield, Douglas
Forsberg, Nils
Grahn, Thomas
Olsson, Lars
Karlsson, Bo
Wu, Harry
Ingvarsson, Pär
Lundqvist, Sven-Olof
Niittylae, Totte
Garcia-Gil, M. Rosario

January 2019

Norway spruce is a boreal forest tree species of significant ecological and economic importance. Hen...

VCF file containing information on the identified SNPs

Mukrimin, Mukrimin
Kovalchuk, Andriy
Neves, Leandro G.
Jaber, Emad H.
Haapanen, Matti
Kirst, Matias
Asiegbu, Fred O.

June 2018

The VCF file sontains information on the genetic variants (SNPs) identified by exome resequencing ge...

Genome-wide admixture in the Picea glauca x P. engelmannii hybrid zone_311SNPs

De La Torre, Amanda
Aitken, Sally

March 2014

This file contains Illumina genomic data for 311 candidate gene single nucleotide polymorphisms (SNP...

Additional file 3: of A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Aïda Azaiez (6093365)
Nathalie Pavy (20905)
Sébastien Gérardi (717955)
Jérôme Laroche (276328)
Brian Boyle (276326)
France Gagnon (73555)
Marie-Josée Mottet (3293121)
Jean Beaulieu (717956)
Jean Bousquet (20909)

December 2018

The 30 most SNPed genes among the 16,516 Picea abies genes analysed. (XLSX 15 kb

Additional file 1: of A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Aïda Azaiez (6093365)
Nathalie Pavy (20905)
Sébastien Gérardi (717955)
Jérôme Laroche (276328)
Brian Boyle (276326)
France Gagnon (73555)
Marie-Josée Mottet (3293121)
Jean Beaulieu (717956)
Jean Bousquet (20909)

December 2018

Description of the Picea abies predicted SNP resource including quality parameters. (XLSX 13017 kb

Additional file 2: of A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Aïda Azaiez (6093365)
Nathalie Pavy (20905)
Sébastien Gérardi (717955)
Jérôme Laroche (276328)
Brian Boyle (276326)
France Gagnon (73555)
Marie-Josée Mottet (3293121)
Jean Beaulieu (717956)
Jean Bousquet (20909)

December 2018

Description of Picea abies SNPs successfully genotyped with the Infinium SNP array. (XLSX 1081 kb

A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Aïda Azaiez
Nathalie Pavy
Sébastien Gérardi
Jérôme Laroche
Brian Boyle
France Gagnon
Marie-Josée Mottet
Jean Beaulieu
Jean Bousquet

December 2018

Abstract Background Norway spruce [Picea abies (L.) Karst.] is ecologically and economically one of ...

Additional file 4: of A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Aïda Azaiez (6093365)
Nathalie Pavy (20905)
Sébastien Gérardi (717955)
Jérôme Laroche (276328)
Brian Boyle (276326)
France Gagnon (73555)
Marie-Josée Mottet (3293121)
Jean Beaulieu (717956)
Jean Bousquet (20909)

December 2018

The subgraph representing the most significant GO terms found by the weighted model produced by TopG...

Development of a highly efficient 50K single nucleotide polymorphism genotyping array for the large and complex genome of Norway spruce (Picea abies L. Karst) by whole genome resequencing and its transferability to other spruce species

Bernhardsson, Carolina
Zan, Yanjun
Chen, Zhiqiang
Ingvarsson, Pär K.
Wu, Harry X.

January 2021

Norway spruce (Picea abies L. Karst) is one of the most important forest tree species with significa...

Data from: Development of highly reliable in silico SNP resource and genotyping assay from exome capture and sequencing: an example from black spruce (Picea mariana)

Bousquet, Jean
Pavy, Nathalie
Gagnon, France
Deschênes, Astrid
Boyle, Brian
Beaulieu, Jean

September 2015

Picea mariana is a widely distributed boreal conifer across Canada and the subject of advanced breed...

Data from: Detection of SNPs based on transcriptome sequencing in Norway spruce (Picea abies (L.) Karst)

Heer, Katrin
Ullrich, Kristian Karsten
Liepelt, Sascha
Rensing, Stefan Andreas
Zhou, Jiabin
Ziegenhagen, Birgit
Opgenoorth, Lars

A novel set of SNPs was derived from transcriptome data of ten Norway spruce (Picea abies) trees fro...

Additional file 1: of Exploring the genetic basis of gene transcript abundance and metabolite levels in loblolly pine (Pinus taeda L.) using association mapping and network construction

Mengmeng Lu (3830920)
Candace Seeve (5940248)
Carol Loopstra (5940251)
Konstantin Krutovsky (4724994)

November 2018

Table S1. Annotation of genes containing SNPs associated with gene expression. Table S2. Annotation ...

Leveraging breeding programs and genomic data in Norway spruce (Picea abies L. Karst) for GWAS analysis

Chen, Zhiqiang
Zan, Yanjun
Milesi, Pascal
Zhou, Linghua
Chen, Jun
Milani, Lili
Cui, BinBin
Niu, Shihui
Westin, Johan
Karlsson, Bo
Garcia Gil, Rosario
Lascoux, Martin
Wu, Harry

January 2021

BackgroundGenome-wide association studies (GWAS) identify loci underlying the variation of complex t...

Detection of SNPs based on transcriptome sequencing in Norway spruce (Picea abies (L.) Karst)

Heer, K.
Ullrich, K.
Liepelt, S.
Rensing, S.
Zhou, J.
Ziegenhagen, B.
Opgenoorth, L.

January 2016

A novel set of SNPs was derived from transcriptome data of ten Norway spruce (Picea abies) trees fro...

Genome-wide association study identified novel candidate loci affecting wood formation in Norway spruce

Baison, John
Vidalis, Amaryllis
Zhou, Linghua
Chen, Zhi-Qiang
Li, Zitong
Sillanpaeae, Mikko J.
Bernhardsson, Carolina
Scofield, Douglas
Forsberg, Nils
Grahn, Thomas
Olsson, Lars
Karlsson, Bo
Wu, Harry
Ingvarsson, Pär
Lundqvist, Sven-Olof
Niittylae, Totte
Garcia-Gil, M. Rosario

January 2019

Norway spruce is a boreal forest tree species of significant ecological and economic importance. Hen...

VCF file containing information on the identified SNPs

Mukrimin, Mukrimin
Kovalchuk, Andriy
Neves, Leandro G.
Jaber, Emad H.
Haapanen, Matti
Kirst, Matias
Asiegbu, Fred O.

June 2018

The VCF file sontains information on the genetic variants (SNPs) identified by exome resequencing ge...

Genome-wide admixture in the Picea glauca x P. engelmannii hybrid zone_311SNPs

De La Torre, Amanda
Aitken, Sally

March 2014

This file contains Illumina genomic data for 311 candidate gene single nucleotide polymorphisms (SNP...

Additional file 5: of A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Abstract

Extracted data

Additional file 5: of A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Abstract

Extracted data

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