Additional file 1: of A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Additional file 3: of A high-throughput SNP discovery strategy for RNA-seq data

Yun Zhao (48978)
Ke Wang (82395)
Wen-li Wang (3613889)
Ting-ting Yin (6409010)
Wei-qi Dong (6409013)
Chang-jie Xu (6409016)

February 2019

Table S3. Number of SNPs predicted from RNA-seq data under different paired-end read lengths, assemb...

Supplemental Data File

Hayley Tumas (17735943)

January 2024

Methods and supplementary results for SNP array development, genotyping, and genetic linkage map dev...

Additional file 7: of A high-throughput SNP discovery strategy for RNA-seq data

Yun Zhao (48978)
Ke Wang (82395)
Wen-li Wang (3613889)
Ting-ting Yin (6409010)
Wei-qi Dong (6409013)
Chang-jie Xu (6409016)

February 2019

Table S7. An overview of the number of SNPs predicted in targeted genes from peach with ten differen...

Additional file 2: of A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Aïda Azaiez (6093365)
Nathalie Pavy (20905)
Sébastien Gérardi (717955)
Jérôme Laroche (276328)
Brian Boyle (276326)
France Gagnon (73555)
Marie-Josée Mottet (3293121)
Jean Beaulieu (717956)
Jean Bousquet (20909)

December 2018

Description of Picea abies SNPs successfully genotyped with the Infinium SNP array. (XLSX 1081 kb

Additional file 3: of A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Aïda Azaiez (6093365)
Nathalie Pavy (20905)
Sébastien Gérardi (717955)
Jérôme Laroche (276328)
Brian Boyle (276326)
France Gagnon (73555)
Marie-Josée Mottet (3293121)
Jean Beaulieu (717956)
Jean Bousquet (20909)

December 2018

The 30 most SNPed genes among the 16,516 Picea abies genes analysed. (XLSX 15 kb

Additional file 5: of A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Aïda Azaiez (6093365)
Nathalie Pavy (20905)
Sébastien Gérardi (717955)
Jérôme Laroche (276328)
Brian Boyle (276326)
France Gagnon (73555)
Marie-Josée Mottet (3293121)
Jean Beaulieu (717956)
Jean Bousquet (20909)

December 2018

Annotation of the 16,516 Picea abies genes according to GCAT and ConGenIE database with GO accession...

A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Aïda Azaiez
Nathalie Pavy
Sébastien Gérardi
Jérôme Laroche
Brian Boyle
France Gagnon
Marie-Josée Mottet
Jean Beaulieu
Jean Bousquet

December 2018

Abstract Background Norway spruce [Picea abies (L.) Karst.] is ecologically and economically one of ...

Additional file 4: of A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Aïda Azaiez (6093365)
Nathalie Pavy (20905)
Sébastien Gérardi (717955)
Jérôme Laroche (276328)
Brian Boyle (276326)
France Gagnon (73555)
Marie-Josée Mottet (3293121)
Jean Beaulieu (717956)
Jean Bousquet (20909)

December 2018

The subgraph representing the most significant GO terms found by the weighted model produced by TopG...

Additional file 1: of Exploring the genetic basis of gene transcript abundance and metabolite levels in loblolly pine (Pinus taeda L.) using association mapping and network construction

Mengmeng Lu (3830920)
Candace Seeve (5940248)
Carol Loopstra (5940251)
Konstantin Krutovsky (4724994)

November 2018

Table S1. Annotation of genes containing SNPs associated with gene expression. Table S2. Annotation ...

Data from: Development of highly reliable in silico SNP resource and genotyping assay from exome capture and sequencing: an example from black spruce (Picea mariana)

Bousquet, Jean
Pavy, Nathalie
Gagnon, France
Deschênes, Astrid
Boyle, Brian
Beaulieu, Jean

Picea mariana is a widely distributed boreal conifer across Canada and the subject of advanced breed...

Additional file 1: of Comparative in silico analysis of SSRs in coding regions of high confidence predicted genes in Norway spruce (Picea abies) and Loblolly pine (Pinus taeda)

Sonali Ranade (3437294)
Yao-Cheng Lin (800872)
Yves Peer (3437291)
María García-Gil (3437297)

December 2015

Putative primer pairs for the class I and class II SSRs in the coding regions of Norway spruce (Pice...

Data from: Detection of SNPs based on transcriptome sequencing in Norway spruce (Picea abies (L.) Karst)

Heer, Katrin
Ullrich, Kristian Karsten
Liepelt, Sascha
Rensing, Stefan Andreas
Zhou, Jiabin
Ziegenhagen, Birgit
Opgenoorth, Lars

January 2016

A novel set of SNPs was derived from transcriptome data of ten Norway spruce (Picea abies) trees fro...

Additional file 1 of Accuracy of RNAseq based SNP discovery and genotyping in Populusnigra

Odile Rogier (6080822)
Aurélien Chateigner (2144302)
Souhila Amanzougarene (6080828)
Marie-Claude Lesage-Descauses (6080831)
Sandrine Balzergue (83532)
Véronique Brunaud (6013)
José Caius (6080837)
Ludivine Soubigou-Taconnat (258892)
Véronique Jorge (6080840)
Vincent Segura (83226)

December 2018

Position of SNPs on Populus trichocarpa v3.0 genome version of the SNP identified by Marroni et al. ...

VCF file containing information on the identified SNPs

Mukrimin, Mukrimin
Kovalchuk, Andriy
Neves, Leandro G.
Jaber, Emad H.
Haapanen, Matti
Kirst, Matias
Asiegbu, Fred O.

June 2018

The VCF file sontains information on the genetic variants (SNPs) identified by exome resequencing ge...

Development of a highly efficient 50K single nucleotide polymorphism genotyping array for the large and complex genome of Norway spruce (Picea abies L. Karst) by whole genome resequencing and its transferability to other spruce species

Bernhardsson, Carolina
Zan, Yanjun
Chen, Zhiqiang
Ingvarsson, Pär K.
Wu, Harry X.

January 2021

Norway spruce (Picea abies L. Karst) is one of the most important forest tree species with significa...

Additional file 3: of A high-throughput SNP discovery strategy for RNA-seq data

Yun Zhao (48978)
Ke Wang (82395)
Wen-li Wang (3613889)
Ting-ting Yin (6409010)
Wei-qi Dong (6409013)
Chang-jie Xu (6409016)

February 2019

Table S3. Number of SNPs predicted from RNA-seq data under different paired-end read lengths, assemb...

Supplemental Data File

Hayley Tumas (17735943)

January 2024

Methods and supplementary results for SNP array development, genotyping, and genetic linkage map dev...

Additional file 7: of A high-throughput SNP discovery strategy for RNA-seq data

Yun Zhao (48978)
Ke Wang (82395)
Wen-li Wang (3613889)
Ting-ting Yin (6409010)
Wei-qi Dong (6409013)
Chang-jie Xu (6409016)

February 2019

Table S7. An overview of the number of SNPs predicted in targeted genes from peach with ten differen...

Additional file 2: of A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Aïda Azaiez (6093365)
Nathalie Pavy (20905)
Sébastien Gérardi (717955)
Jérôme Laroche (276328)
Brian Boyle (276326)
France Gagnon (73555)
Marie-Josée Mottet (3293121)
Jean Beaulieu (717956)
Jean Bousquet (20909)

December 2018

Description of Picea abies SNPs successfully genotyped with the Infinium SNP array. (XLSX 1081 kb

Additional file 3: of A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Aïda Azaiez (6093365)
Nathalie Pavy (20905)
Sébastien Gérardi (717955)
Jérôme Laroche (276328)
Brian Boyle (276326)
France Gagnon (73555)
Marie-Josée Mottet (3293121)
Jean Beaulieu (717956)
Jean Bousquet (20909)

December 2018

The 30 most SNPed genes among the 16,516 Picea abies genes analysed. (XLSX 15 kb

Additional file 5: of A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Aïda Azaiez (6093365)
Nathalie Pavy (20905)
Sébastien Gérardi (717955)
Jérôme Laroche (276328)
Brian Boyle (276326)
France Gagnon (73555)
Marie-Josée Mottet (3293121)
Jean Beaulieu (717956)
Jean Bousquet (20909)

December 2018

Annotation of the 16,516 Picea abies genes according to GCAT and ConGenIE database with GO accession...

A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Aïda Azaiez
Nathalie Pavy
Sébastien Gérardi
Jérôme Laroche
Brian Boyle
France Gagnon
Marie-Josée Mottet
Jean Beaulieu
Jean Bousquet

December 2018

Abstract Background Norway spruce [Picea abies (L.) Karst.] is ecologically and economically one of ...

Additional file 4: of A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Aïda Azaiez (6093365)
Nathalie Pavy (20905)
Sébastien Gérardi (717955)
Jérôme Laroche (276328)
Brian Boyle (276326)
France Gagnon (73555)
Marie-Josée Mottet (3293121)
Jean Beaulieu (717956)
Jean Bousquet (20909)

December 2018

The subgraph representing the most significant GO terms found by the weighted model produced by TopG...

Additional file 1: of Exploring the genetic basis of gene transcript abundance and metabolite levels in loblolly pine (Pinus taeda L.) using association mapping and network construction

Mengmeng Lu (3830920)
Candace Seeve (5940248)
Carol Loopstra (5940251)
Konstantin Krutovsky (4724994)

November 2018

Table S1. Annotation of genes containing SNPs associated with gene expression. Table S2. Annotation ...

Data from: Development of highly reliable in silico SNP resource and genotyping assay from exome capture and sequencing: an example from black spruce (Picea mariana)

Bousquet, Jean
Pavy, Nathalie
Gagnon, France
Deschênes, Astrid
Boyle, Brian
Beaulieu, Jean

Picea mariana is a widely distributed boreal conifer across Canada and the subject of advanced breed...

Additional file 1: of Comparative in silico analysis of SSRs in coding regions of high confidence predicted genes in Norway spruce (Picea abies) and Loblolly pine (Pinus taeda)

Sonali Ranade (3437294)
Yao-Cheng Lin (800872)
Yves Peer (3437291)
María García-Gil (3437297)

December 2015

Putative primer pairs for the class I and class II SSRs in the coding regions of Norway spruce (Pice...

Data from: Detection of SNPs based on transcriptome sequencing in Norway spruce (Picea abies (L.) Karst)

Heer, Katrin
Ullrich, Kristian Karsten
Liepelt, Sascha
Rensing, Stefan Andreas
Zhou, Jiabin
Ziegenhagen, Birgit
Opgenoorth, Lars

January 2016

A novel set of SNPs was derived from transcriptome data of ten Norway spruce (Picea abies) trees fro...

Additional file 1 of Accuracy of RNAseq based SNP discovery and genotyping in Populusnigra

Odile Rogier (6080822)
Aurélien Chateigner (2144302)
Souhila Amanzougarene (6080828)
Marie-Claude Lesage-Descauses (6080831)
Sandrine Balzergue (83532)
Véronique Brunaud (6013)
José Caius (6080837)
Ludivine Soubigou-Taconnat (258892)
Véronique Jorge (6080840)
Vincent Segura (83226)

December 2018

Position of SNPs on Populus trichocarpa v3.0 genome version of the SNP identified by Marroni et al. ...

VCF file containing information on the identified SNPs

Mukrimin, Mukrimin
Kovalchuk, Andriy
Neves, Leandro G.
Jaber, Emad H.
Haapanen, Matti
Kirst, Matias
Asiegbu, Fred O.

June 2018

The VCF file sontains information on the genetic variants (SNPs) identified by exome resequencing ge...

Development of a highly efficient 50K single nucleotide polymorphism genotyping array for the large and complex genome of Norway spruce (Picea abies L. Karst) by whole genome resequencing and its transferability to other spruce species

Bernhardsson, Carolina
Zan, Yanjun
Chen, Zhiqiang
Ingvarsson, Pär K.
Wu, Harry X.

January 2021

Norway spruce (Picea abies L. Karst) is one of the most important forest tree species with significa...

Additional file 3: of A high-throughput SNP discovery strategy for RNA-seq data

Yun Zhao (48978)
Ke Wang (82395)
Wen-li Wang (3613889)
Ting-ting Yin (6409010)
Wei-qi Dong (6409013)
Chang-jie Xu (6409016)

February 2019

Table S3. Number of SNPs predicted from RNA-seq data under different paired-end read lengths, assemb...

Supplemental Data File

Hayley Tumas (17735943)

January 2024

Methods and supplementary results for SNP array development, genotyping, and genetic linkage map dev...

Additional file 7: of A high-throughput SNP discovery strategy for RNA-seq data

Yun Zhao (48978)
Ke Wang (82395)
Wen-li Wang (3613889)
Ting-ting Yin (6409010)
Wei-qi Dong (6409013)
Chang-jie Xu (6409016)

February 2019

Table S7. An overview of the number of SNPs predicted in targeted genes from peach with ten differen...

Additional file 1: of A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Abstract

Extracted data

Additional file 1: of A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies)

Abstract

Extracted data

Related items

Related items