Additional file 4: of Complex regulation of microRNAs in roots of competitively-grown isogenic Nicotiana attenuata plants with different capacities to interact with arbuscular mycorrhizal fungi

Additional file 2: of Identification and characterisation of microRNAs and their target genes in phosphate-starved Nicotiana benthamiana by small RNA deep sequencing and 5âRACE analysis

Amanda Huen (6093488)
Julia Bally (204199)
Penelope Smith (3196053)

December 2018

Figure S1. Microsoft PowerPoint Presentation (.pptx). Predicted structures for N. benthamiana pri-mi...

Additional file 5: of Revealing the dominant long noncoding RNAs responding to the infection with Colletotrichum gloeosporioides in Hevea brasiliensis

Hongyan Yin (5066285)
Xiaodong Zhang (183379)
Bei Zhang (428038)
Hongli Luo (4521463)
Chaozu He (214060)

April 2019

Figure S4. The relative expressions of miRNAs in rubber tree mesophyll protoplasts. (A) The relative...

Additional file 2: of Suppression of microRNA159 impacts multiple agronomic traits in rice (Oryza sativa L.)

Yafan Zhao (276660)
Huili Wen (4609090)
Sachin Teotia (4609093)
Yanxiu Du (276657)
Jing Zhang (23775)
Junzhou Li (276658)
Hongzheng Sun (276656)
Guiliang Tang (226165)
Ting Peng (276655)
Quanzhi Zhao (276661)

November 2017

Predicted targets of OsmiR159 by psRobot and their expressions detected by RNAseq. (DOCX 15 kb

Additional file 5: of Complex regulation of microRNAs in roots of competitively-grown isogenic Nicotiana attenuata plants with different capacities to interact with arbuscular mycorrhizal fungi

Priyanka Pandey (104863)
Ming Wang (172316)
Ian Baldwin (3286581)
Shree Pandey (4049170)
Karin Groten (550927)

December 2018

Table S5. Gene Ontology analysis of putative targets of differentially enriched miRNAs. (XLSX 11 kb

Additional file 2: of Complex regulation of microRNAs in roots of competitively-grown isogenic Nicotiana attenuata plants with different capacities to interact with arbuscular mycorrhizal fungi

Priyanka Pandey (104863)
Ming Wang (172316)
Ian Baldwin (3286581)
Shree Pandey (4049170)
Karin Groten (550927)

December 2018

Table S2. Mature miRNAs conserved to other species when mapped against 72 plant species in miRBase. ...

Additional file 3: of Complex regulation of microRNAs in roots of competitively-grown isogenic Nicotiana attenuata plants with different capacities to interact with arbuscular mycorrhizal fungi

Priyanka Pandey (104863)
Ming Wang (172316)
Ian Baldwin (3286581)
Shree Pandey (4049170)
Karin Groten (550927)

December 2018

Table S3. Differentially expressed miRNAs for EV and irCCamK with and without AMF. (XLSX 41 kb

Additional file 7: of Complex regulation of microRNAs in roots of competitively-grown isogenic Nicotiana attenuata plants with different capacities to interact with arbuscular mycorrhizal fungi

Priyanka Pandey (104863)
Ming Wang (172316)
Ian Baldwin (3286581)
Shree Pandey (4049170)
Karin Groten (550927)

December 2018

Table S6. miRNAs differentially expressed in this study with (+) and without (â) AMF inoculum in t...

Additional file 6: of Complex regulation of microRNAs in roots of competitively-grown isogenic Nicotiana attenuata plants with different capacities to interact with arbuscular mycorrhizal fungi

Priyanka Pandey (104863)
Ming Wang (172316)
Ian Baldwin (3286581)
Shree Pandey (4049170)
Karin Groten (550927)

December 2018

Figure S1. Phylogenetic analysis of NIATv7_g16119, similar to nodulation signaling protein 2 in Medi...

Additional file 4: Table S3. of Genome-wide expression profiling of microRNAs in poplar upon infection with the foliar rust fungus Melampsora larici-populina

Min Chen (147733)
Zhimin Cao (3429407)

September 2015

Differentially expressed miRNAs from P. szechuanica and target gene functional annotations. (XLSX 31...

Additional file 10: Table S4. of Identification of Nicotiana benthamiana microRNAs and their targets using high throughput sequencing and degradome analysis

Ivett Baksa (3484013)
Tibor Nagy (425445)
Endre Barta (5939)
Zoltán Havelda (3484010)
Éva Várallyay (3484007)
Dániel Silhavy (22606)
József Burgyán (222071)
György Szittya (3484016)

December 2015

Oligonucleotide sequences used for probes in Northern blot analysis and RT-PCR validation. (XLSX 11 ...

Additional file 1: of Identification and characterisation of microRNAs and their target genes in phosphate-starved Nicotiana benthamiana by small RNA deep sequencing and 5âRACE analysis

Amanda Huen (6093488)
Julia Bally (204199)
Penelope Smith (3196053)

December 2018

Table S1. Microsoft Excel Worksheet (.xlsx). sRNA deep sequencing read matches to predicted pri-miRN...

Additional file 9: Figure S6. of Identification of Nicotiana benthamiana microRNAs and their targets using high throughput sequencing and degradome analysis

Ivett Baksa (3484013)
Tibor Nagy (425445)
Endre Barta (5939)
Zoltán Havelda (3484010)
Éva Várallyay (3484007)
Dániel Silhavy (22606)
József Burgyán (222071)
György Szittya (3484016)

December 2015

Gene Ontology (GO) analysis of miRNA target mRNAs. Functional annotation of known and N. benthamiana...

Additional file 1: Table S1. of Identification of Nicotiana benthamiana microRNAs and their targets using high throughput sequencing and degradome analysis

Ivett Baksa (3484013)
Tibor Nagy (425445)
Endre Barta (5939)
Zoltán Havelda (3484010)
Éva Várallyay (3484007)
Dániel Silhavy (22606)
József Burgyán (222071)
György Szittya (3484016)

December 2015

MFEI values of conserved and other known miRNAs in Nicotiana benthamiana. (XLSX 18 kb

Additional file 1: of The miRNAome of ramie (Boehmeria nivea L.): identification, expression, and potential roles of novel microRNAs in regulation of cadmium stress response

Kunmei Chen (5135393)
Yongting Yu (397328)
Kai Sun (140584)
Heping Xiong (5135387)
Chunming Yu (5135384)
Ping Chen (89712)
Jikang Chen (5135381)
Gang Gao (5135390)
Aiguo Zhu (3327450)

December 2018

Table S1. Statistic data of high-throughput sequencing. Table S2. Pathway and putative function of g...

Additional file 6: of Identification and analysis of oxygen responsive microRNAs in the root of wild tomato (S. habrochaites)

Yabing Hou (6456299)
Fangling Jiang (1845976)
Xiaolan Zheng (1638844)
Zhen Wu (358187)

March 2019

Predicated targets of differentially expressed known miRNAs between hypoxiated and control wild toma...

Additional file 2: of Identification and characterisation of microRNAs and their target genes in phosphate-starved Nicotiana benthamiana by small RNA deep sequencing and 5âRACE analysis

Amanda Huen (6093488)
Julia Bally (204199)
Penelope Smith (3196053)

December 2018

Figure S1. Microsoft PowerPoint Presentation (.pptx). Predicted structures for N. benthamiana pri-mi...

Additional file 5: of Revealing the dominant long noncoding RNAs responding to the infection with Colletotrichum gloeosporioides in Hevea brasiliensis

Hongyan Yin (5066285)
Xiaodong Zhang (183379)
Bei Zhang (428038)
Hongli Luo (4521463)
Chaozu He (214060)

April 2019

Figure S4. The relative expressions of miRNAs in rubber tree mesophyll protoplasts. (A) The relative...

Additional file 2: of Suppression of microRNA159 impacts multiple agronomic traits in rice (Oryza sativa L.)

Yafan Zhao (276660)
Huili Wen (4609090)
Sachin Teotia (4609093)
Yanxiu Du (276657)
Jing Zhang (23775)
Junzhou Li (276658)
Hongzheng Sun (276656)
Guiliang Tang (226165)
Ting Peng (276655)
Quanzhi Zhao (276661)

November 2017

Predicted targets of OsmiR159 by psRobot and their expressions detected by RNAseq. (DOCX 15 kb

Additional file 5: of Complex regulation of microRNAs in roots of competitively-grown isogenic Nicotiana attenuata plants with different capacities to interact with arbuscular mycorrhizal fungi

Priyanka Pandey (104863)
Ming Wang (172316)
Ian Baldwin (3286581)
Shree Pandey (4049170)
Karin Groten (550927)

December 2018

Table S5. Gene Ontology analysis of putative targets of differentially enriched miRNAs. (XLSX 11 kb

Additional file 2: of Complex regulation of microRNAs in roots of competitively-grown isogenic Nicotiana attenuata plants with different capacities to interact with arbuscular mycorrhizal fungi

Priyanka Pandey (104863)
Ming Wang (172316)
Ian Baldwin (3286581)
Shree Pandey (4049170)
Karin Groten (550927)

December 2018

Table S2. Mature miRNAs conserved to other species when mapped against 72 plant species in miRBase. ...

Additional file 3: of Complex regulation of microRNAs in roots of competitively-grown isogenic Nicotiana attenuata plants with different capacities to interact with arbuscular mycorrhizal fungi

Priyanka Pandey (104863)
Ming Wang (172316)
Ian Baldwin (3286581)
Shree Pandey (4049170)
Karin Groten (550927)

December 2018

Table S3. Differentially expressed miRNAs for EV and irCCamK with and without AMF. (XLSX 41 kb

Additional file 7: of Complex regulation of microRNAs in roots of competitively-grown isogenic Nicotiana attenuata plants with different capacities to interact with arbuscular mycorrhizal fungi

Priyanka Pandey (104863)
Ming Wang (172316)
Ian Baldwin (3286581)
Shree Pandey (4049170)
Karin Groten (550927)

December 2018

Table S6. miRNAs differentially expressed in this study with (+) and without (â) AMF inoculum in t...

Additional file 6: of Complex regulation of microRNAs in roots of competitively-grown isogenic Nicotiana attenuata plants with different capacities to interact with arbuscular mycorrhizal fungi

Priyanka Pandey (104863)
Ming Wang (172316)
Ian Baldwin (3286581)
Shree Pandey (4049170)
Karin Groten (550927)

December 2018

Figure S1. Phylogenetic analysis of NIATv7_g16119, similar to nodulation signaling protein 2 in Medi...

Additional file 4: Table S3. of Genome-wide expression profiling of microRNAs in poplar upon infection with the foliar rust fungus Melampsora larici-populina

Min Chen (147733)
Zhimin Cao (3429407)

September 2015

Differentially expressed miRNAs from P. szechuanica and target gene functional annotations. (XLSX 31...

Additional file 10: Table S4. of Identification of Nicotiana benthamiana microRNAs and their targets using high throughput sequencing and degradome analysis

Ivett Baksa (3484013)
Tibor Nagy (425445)
Endre Barta (5939)
Zoltán Havelda (3484010)
Éva Várallyay (3484007)
Dániel Silhavy (22606)
József Burgyán (222071)
György Szittya (3484016)

December 2015

Oligonucleotide sequences used for probes in Northern blot analysis and RT-PCR validation. (XLSX 11 ...

Additional file 1: of Identification and characterisation of microRNAs and their target genes in phosphate-starved Nicotiana benthamiana by small RNA deep sequencing and 5âRACE analysis

Amanda Huen (6093488)
Julia Bally (204199)
Penelope Smith (3196053)

December 2018

Table S1. Microsoft Excel Worksheet (.xlsx). sRNA deep sequencing read matches to predicted pri-miRN...

Additional file 9: Figure S6. of Identification of Nicotiana benthamiana microRNAs and their targets using high throughput sequencing and degradome analysis

Ivett Baksa (3484013)
Tibor Nagy (425445)
Endre Barta (5939)
Zoltán Havelda (3484010)
Éva Várallyay (3484007)
Dániel Silhavy (22606)
József Burgyán (222071)
György Szittya (3484016)

December 2015

Gene Ontology (GO) analysis of miRNA target mRNAs. Functional annotation of known and N. benthamiana...

Additional file 1: Table S1. of Identification of Nicotiana benthamiana microRNAs and their targets using high throughput sequencing and degradome analysis

Ivett Baksa (3484013)
Tibor Nagy (425445)
Endre Barta (5939)
Zoltán Havelda (3484010)
Éva Várallyay (3484007)
Dániel Silhavy (22606)
József Burgyán (222071)
György Szittya (3484016)

December 2015

MFEI values of conserved and other known miRNAs in Nicotiana benthamiana. (XLSX 18 kb

Additional file 1: of The miRNAome of ramie (Boehmeria nivea L.): identification, expression, and potential roles of novel microRNAs in regulation of cadmium stress response

Kunmei Chen (5135393)
Yongting Yu (397328)
Kai Sun (140584)
Heping Xiong (5135387)
Chunming Yu (5135384)
Ping Chen (89712)
Jikang Chen (5135381)
Gang Gao (5135390)
Aiguo Zhu (3327450)

December 2018

Table S1. Statistic data of high-throughput sequencing. Table S2. Pathway and putative function of g...

Additional file 6: of Identification and analysis of oxygen responsive microRNAs in the root of wild tomato (S. habrochaites)

Yabing Hou (6456299)
Fangling Jiang (1845976)
Xiaolan Zheng (1638844)
Zhen Wu (358187)

March 2019

Predicated targets of differentially expressed known miRNAs between hypoxiated and control wild toma...

Additional file 2: of Identification and characterisation of microRNAs and their target genes in phosphate-starved Nicotiana benthamiana by small RNA deep sequencing and 5âRACE analysis

Amanda Huen (6093488)
Julia Bally (204199)
Penelope Smith (3196053)

December 2018

Figure S1. Microsoft PowerPoint Presentation (.pptx). Predicted structures for N. benthamiana pri-mi...

Additional file 5: of Revealing the dominant long noncoding RNAs responding to the infection with Colletotrichum gloeosporioides in Hevea brasiliensis

Hongyan Yin (5066285)
Xiaodong Zhang (183379)
Bei Zhang (428038)
Hongli Luo (4521463)
Chaozu He (214060)

April 2019

Figure S4. The relative expressions of miRNAs in rubber tree mesophyll protoplasts. (A) The relative...

Additional file 2: of Suppression of microRNA159 impacts multiple agronomic traits in rice (Oryza sativa L.)

Yafan Zhao (276660)
Huili Wen (4609090)
Sachin Teotia (4609093)
Yanxiu Du (276657)
Jing Zhang (23775)
Junzhou Li (276658)
Hongzheng Sun (276656)
Guiliang Tang (226165)
Ting Peng (276655)
Quanzhi Zhao (276661)

November 2017

Predicted targets of OsmiR159 by psRobot and their expressions detected by RNAseq. (DOCX 15 kb

Additional file 4: of Complex regulation of microRNAs in roots of competitively-grown isogenic Nicotiana attenuata plants with different capacities to interact with arbuscular mycorrhizal fungi

Abstract

Extracted data

Additional file 4: of Complex regulation of microRNAs in roots of competitively-grown isogenic Nicotiana attenuata plants with different capacities to interact with arbuscular mycorrhizal fungi

Abstract

Extracted data

Related items

Related items