Additional file 2: of Suppression of microRNA159 impacts multiple agronomic traits in rice (Oryza sativa L.)

Additional file 1: of Analysis of Brachypodium miRNA targets: evidence for diverse control during stress and conservation in bioenergy crops

Karl Franke (5541998)
Skye Schmidt (5541995)
Sunhee Park (1700167)
Dong-Hoon Jeong (3567239)
Monica Accerbi (5541992)
Pamela Green (5195390)

July 2018

Table S1. RNAseq Libraries. Summary statistics of Brachypodium RNAseq libraries. Table S2. BDI Promi...

Additional file 1: of A dynamic degradome landscape on miRNAs and their predicted targets in sugarcane caused by Sporisorium scitamineum stress

Yachun Su (505290)
Xinhuan Xiao (6245450)
Hui Ling (505292)
Ning Huang (623370)
Feng Liu (72874)
Weihua Su (668307)
Yuye Zhang (1499140)
Liping Xu (133926)
Khushi Muhammad (6245453)
Youxiong Que (505294)

January 2019

Table S1. The qRT-PCR primers of the predicted target genes. Table S2. The qRT-PCR primers of miRNAs...

MOESM12 of Altered expression profiles of microRNA families during de-etiolation of maize and rice leaves

Jiajia Xu (688438)
Yuanyuan Li (18671)
Yaling Wang (800597)
Xinyu Liu (34266)
Xin-Guang Zhu (18669)

February 2017

Additional file 12. Precursor sequences of predicted candidate lncRNAs and their potential to act as...

Additional file 4: of Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage

Boon Cheah (3558509)
Kalaivani Nadarajah (3558515)
Mayur Divate (3558512)
Ratnam Wickneswari (117503)

September 2015

Statistics of clean reads mapped to miRBase 21. Table shows the statistics of clean reads mapped to ...

Additional file 3: of miR2118-triggered phased siRNAs are differentially expressed during the panicle development of wild and domesticated African rice species

K. Ta (3467165)
F. Sabot (3249348)
H. Adam (3467162)
Y. Vigouroux (3249342)
S. De Mita (3467153)
A. GhesquiĂ¨re (3467147)
N. Do (3467150)
P. Gantet (3467159)
S. Jouannic (3467156)

March 2016

Genomic distribution and abundance of O. barthii and O. glaberrima panicle-derived small RNAs on O. ...

Suppression of microRNA159 impacts multiple agronomic traits in rice (Oryza sativa L.)

Zhao, Yafan
Wen, Huili
Teotia, Sachin
Du, Yanxiu
Zhang, Jing
Li, Junzhou
Sun, Hongzheng
Tang, Guiliang
Peng, Ting
Zhao, Quanzhi

November 2017

Additional file 3: of Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage

Boon Cheah (3558509)
Kalaivani Nadarajah (3558515)
Mayur Divate (3558512)
Ratnam Wickneswari (117503)

September 2015

Length distribution of small RNA reads. Length distribution (length vs frequency percentage) of the ...

Additional file 8: of Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage

Boon Cheah (3558509)
Kalaivani Nadarajah (3558515)
Mayur Divate (3558512)
Ratnam Wickneswari (117503)

September 2015

Differentially expressed known Oryza sativa miRNAs. (A) Conserved miRNA families and (B) Non- conser...

Additional file 1: of Transcriptomic analyses of rice (Oryza sativa) genes and non-coding RNAs under nitrogen starvation using multiple omics technologies

Sang-Yoon Shin (3576818)
Jin Jeong (3477881)
Jae Lim (3464372)
Taewook Kim (2064013)
June Park (1880791)
Ju-Kon Kim (105576)
Chanseok Shin (416808)

July 2018

Figure S1. Correlation analysis of strand-specific RNA-Seq and small RNA-Seq. Figure S2. GO analysis...

Additional file 6: of Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage

Boon Cheah (3558509)
Kalaivani Nadarajah (3558515)
Mayur Divate (3558512)
Ratnam Wickneswari (117503)

September 2015

Novel miRNA analysis. (A) Novel miRNA candidates identified to be conserved in at least two librarie...

Additional file 4: of Complex regulation of microRNAs in roots of competitively-grown isogenic Nicotiana attenuata plants with different capacities to interact with arbuscular mycorrhizal fungi

Priyanka Pandey (104863)
Ming Wang (172316)
Ian Baldwin (3286581)
Shree Pandey (4049170)
Karin Groten (550927)

December 2018

Table S4. Target genes for selected DEmiRs using psRNA Target and target description. (XLSX 667 kb

Additional file 1: of Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage

Boon Cheah (3558509)
Kalaivani Nadarajah (3558515)
Mayur Divate (3558512)
Ratnam Wickneswari (117503)

September 2015

Flowchart for the analysis of sequence reads from small RNA libraries. (PDF 189 kb

Additional file 2: of Overexpression of Solanum habrochaites microRNA319d (sha-miR319d) confers chilling and heat stress tolerance in tomato (S. lycopersicum)

Xiaopu Shi (6730727)
Fangling Jiang (1845976)
Junqin Wen (6730730)
Zhen Wu (358187)

May 2019

Figure S2 Sha-miR319d target gene prediction and expression level analysis. A Sha-miR319d target gen...

Additional file 1: of Genome-wide identification of leaf abscission associated microRNAs in sugarcane (Saccharum officinarum L.)

Ming Li (91180)
Zhaoxu Liang (3465032)
Shanshan He (1395664)
Yuan Zeng (332785)
Yan Jing (1357128)
Weikuan Fang (4468345)
Kaichao Wu (3465041)
Guanyu Wang (34334)
Xia Ning (2121487)
Lunwang Wang (3465038)
Song Li (1233774)
Hongwei Tan (447628)
Fang Tan (353838)

September 2017

Supplementary Dataset. Tables of Sugarcane conserved and novel miRNAs and Target prediction of diffe...

Additional file 5: of Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage

Boon Cheah (3558509)
Kalaivani Nadarajah (3558515)
Mayur Divate (3558512)
Ratnam Wickneswari (117503)

September 2015

The Solexa sequencing expression profile of known Oryza sativa mature miRNAs deposited in miRBase 21...

Additional file 1: of Analysis of Brachypodium miRNA targets: evidence for diverse control during stress and conservation in bioenergy crops

Karl Franke (5541998)
Skye Schmidt (5541995)
Sunhee Park (1700167)
Dong-Hoon Jeong (3567239)
Monica Accerbi (5541992)
Pamela Green (5195390)

July 2018

Table S1. RNAseq Libraries. Summary statistics of Brachypodium RNAseq libraries. Table S2. BDI Promi...

Additional file 1: of A dynamic degradome landscape on miRNAs and their predicted targets in sugarcane caused by Sporisorium scitamineum stress

Yachun Su (505290)
Xinhuan Xiao (6245450)
Hui Ling (505292)
Ning Huang (623370)
Feng Liu (72874)
Weihua Su (668307)
Yuye Zhang (1499140)
Liping Xu (133926)
Khushi Muhammad (6245453)
Youxiong Que (505294)

January 2019

Table S1. The qRT-PCR primers of the predicted target genes. Table S2. The qRT-PCR primers of miRNAs...

MOESM12 of Altered expression profiles of microRNA families during de-etiolation of maize and rice leaves

Jiajia Xu (688438)
Yuanyuan Li (18671)
Yaling Wang (800597)
Xinyu Liu (34266)
Xin-Guang Zhu (18669)

February 2017

Additional file 12. Precursor sequences of predicted candidate lncRNAs and their potential to act as...

Additional file 4: of Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage

Boon Cheah (3558509)
Kalaivani Nadarajah (3558515)
Mayur Divate (3558512)
Ratnam Wickneswari (117503)

September 2015

Statistics of clean reads mapped to miRBase 21. Table shows the statistics of clean reads mapped to ...

Additional file 3: of miR2118-triggered phased siRNAs are differentially expressed during the panicle development of wild and domesticated African rice species

K. Ta (3467165)
F. Sabot (3249348)
H. Adam (3467162)
Y. Vigouroux (3249342)
S. De Mita (3467153)
A. GhesquiĂ¨re (3467147)
N. Do (3467150)
P. Gantet (3467159)
S. Jouannic (3467156)

March 2016

Genomic distribution and abundance of O. barthii and O. glaberrima panicle-derived small RNAs on O. ...

Suppression of microRNA159 impacts multiple agronomic traits in rice (Oryza sativa L.)

Zhao, Yafan
Wen, Huili
Teotia, Sachin
Du, Yanxiu
Zhang, Jing
Li, Junzhou
Sun, Hongzheng
Tang, Guiliang
Peng, Ting
Zhao, Quanzhi

November 2017

Additional file 3: of Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage

Boon Cheah (3558509)
Kalaivani Nadarajah (3558515)
Mayur Divate (3558512)
Ratnam Wickneswari (117503)

September 2015

Length distribution of small RNA reads. Length distribution (length vs frequency percentage) of the ...

Additional file 8: of Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage

Boon Cheah (3558509)
Kalaivani Nadarajah (3558515)
Mayur Divate (3558512)
Ratnam Wickneswari (117503)

September 2015

Differentially expressed known Oryza sativa miRNAs. (A) Conserved miRNA families and (B) Non- conser...

Additional file 1: of Transcriptomic analyses of rice (Oryza sativa) genes and non-coding RNAs under nitrogen starvation using multiple omics technologies

Sang-Yoon Shin (3576818)
Jin Jeong (3477881)
Jae Lim (3464372)
Taewook Kim (2064013)
June Park (1880791)
Ju-Kon Kim (105576)
Chanseok Shin (416808)

July 2018

Figure S1. Correlation analysis of strand-specific RNA-Seq and small RNA-Seq. Figure S2. GO analysis...

Additional file 6: of Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage

Boon Cheah (3558509)
Kalaivani Nadarajah (3558515)
Mayur Divate (3558512)
Ratnam Wickneswari (117503)

September 2015

Novel miRNA analysis. (A) Novel miRNA candidates identified to be conserved in at least two librarie...

Additional file 4: of Complex regulation of microRNAs in roots of competitively-grown isogenic Nicotiana attenuata plants with different capacities to interact with arbuscular mycorrhizal fungi

Priyanka Pandey (104863)
Ming Wang (172316)
Ian Baldwin (3286581)
Shree Pandey (4049170)
Karin Groten (550927)

December 2018

Table S4. Target genes for selected DEmiRs using psRNA Target and target description. (XLSX 667 kb

Additional file 1: of Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage

Boon Cheah (3558509)
Kalaivani Nadarajah (3558515)
Mayur Divate (3558512)
Ratnam Wickneswari (117503)

September 2015

Flowchart for the analysis of sequence reads from small RNA libraries. (PDF 189 kb

Additional file 2: of Overexpression of Solanum habrochaites microRNA319d (sha-miR319d) confers chilling and heat stress tolerance in tomato (S. lycopersicum)

Xiaopu Shi (6730727)
Fangling Jiang (1845976)
Junqin Wen (6730730)
Zhen Wu (358187)

May 2019

Figure S2 Sha-miR319d target gene prediction and expression level analysis. A Sha-miR319d target gen...

Additional file 1: of Genome-wide identification of leaf abscission associated microRNAs in sugarcane (Saccharum officinarum L.)

Ming Li (91180)
Zhaoxu Liang (3465032)
Shanshan He (1395664)
Yuan Zeng (332785)
Yan Jing (1357128)
Weikuan Fang (4468345)
Kaichao Wu (3465041)
Guanyu Wang (34334)
Xia Ning (2121487)
Lunwang Wang (3465038)
Song Li (1233774)
Hongwei Tan (447628)
Fang Tan (353838)

September 2017

Supplementary Dataset. Tables of Sugarcane conserved and novel miRNAs and Target prediction of diffe...

Additional file 5: of Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage

Boon Cheah (3558509)
Kalaivani Nadarajah (3558515)
Mayur Divate (3558512)
Ratnam Wickneswari (117503)

September 2015

The Solexa sequencing expression profile of known Oryza sativa mature miRNAs deposited in miRBase 21...

Additional file 1: of Analysis of Brachypodium miRNA targets: evidence for diverse control during stress and conservation in bioenergy crops

Karl Franke (5541998)
Skye Schmidt (5541995)
Sunhee Park (1700167)
Dong-Hoon Jeong (3567239)
Monica Accerbi (5541992)
Pamela Green (5195390)

July 2018

Table S1. RNAseq Libraries. Summary statistics of Brachypodium RNAseq libraries. Table S2. BDI Promi...

Additional file 1: of A dynamic degradome landscape on miRNAs and their predicted targets in sugarcane caused by Sporisorium scitamineum stress

Yachun Su (505290)
Xinhuan Xiao (6245450)
Hui Ling (505292)
Ning Huang (623370)
Feng Liu (72874)
Weihua Su (668307)
Yuye Zhang (1499140)
Liping Xu (133926)
Khushi Muhammad (6245453)
Youxiong Que (505294)

January 2019

Table S1. The qRT-PCR primers of the predicted target genes. Table S2. The qRT-PCR primers of miRNAs...

MOESM12 of Altered expression profiles of microRNA families during de-etiolation of maize and rice leaves

Jiajia Xu (688438)
Yuanyuan Li (18671)
Yaling Wang (800597)
Xinyu Liu (34266)
Xin-Guang Zhu (18669)

February 2017

Additional file 12. Precursor sequences of predicted candidate lncRNAs and their potential to act as...

Additional file 2: of Suppression of microRNA159 impacts multiple agronomic traits in rice (Oryza sativa L.)

Abstract

Extracted data

Additional file 2: of Suppression of microRNA159 impacts multiple agronomic traits in rice (Oryza sativa L.)

Abstract

Extracted data

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