Additional file 3: of Genetic diversity and population structure of trifoliate yam (Dioscorea dumetorum Kunth) in Cameroon revealed by genotyping-by-sequencing (GBS)

Next generation sequencing based genotyping, cytometry and phenotyping for understanding diversity and evolution of guinea yams

Girma, G.
Hyma, K.E.
Asiedu, Robert
Mitchell, S.E.
Gedil, M.
Spillane, Charles

July 2016

Published online 1 July 2014Key message Genotyping by sequencing (GBS) is used to understand the...

RESEARCH ARTICLE Evolution and Phylogenetic Diversity of Yam Species (Dioscorea spp.): Implication for Conservation and Agricultural Practices

Marie Florence S
Rine Ngo Ngwe
Denis Ndoumou Omokolo
Simon Joly

August 2016

Yams (Dioscorea spp.) consist of approximately 600 species. Presently, these species are threatened ...

Next-generation genomics-assisted characterization of genetic and phenotypic diversity in yams (Dioscorea spp) to support conservation and breeding for food security

Tessema, Gezahegn Girma

Yams (Dioscorea spp) are staple edible tuber food crop, a favored source of medicinal plants with so...

Additional file 1: of Genetic diversity and population structure of trifoliate yam (Dioscorea dumetorum Kunth) in Cameroon revealed by genotyping-by-sequencing (GBS)

Christian Siadjeu (6100808)
Eike Mayland-Quellhorst (3292008)
Dirk Albach (2611903)

December 2018

Figure S1. Phylogenetic relationships within D. dumetorum based on multilocus concatenated SNP seque...

Additional file 6: of Genetic diversity and population structure of trifoliate yam (Dioscorea dumetorum Kunth) in Cameroon revealed by genotyping-by-sequencing (GBS)

Christian Siadjeu (6100808)
Eike Mayland-Quellhorst (3292008)
Dirk Albach (2611903)

December 2018

Figure S4. Maximum likelihood tree of the inferred gene flow within D. dumetorum species with no gen...

Additional file 2: of Genetic diversity and population structure of trifoliate yam (Dioscorea dumetorum Kunth) in Cameroon revealed by genotyping-by-sequencing (GBS)

Christian Siadjeu (6100808)
Eike Mayland-Quellhorst (3292008)
Dirk Albach (2611903)

December 2018

Figure S2. Estimates of the model evidence for Kâ=â2:5 using TI estimator a) log-evidence and b)...

Additional file 5: of Genetic diversity and population structure of trifoliate yam (Dioscorea dumetorum Kunth) in Cameroon revealed by genotyping-by-sequencing (GBS)

Christian Siadjeu (6100808)
Eike Mayland-Quellhorst (3292008)
Dirk Albach (2611903)

December 2018

Edges, weight of migrations (8 and 9) and likelihood for migrations 0:9. (TREEOUT 1 kb

Genetic diversity and population structure of trifoliate yam (Dioscorea dumetorum Kunth) in Cameroon revealed by genotyping-by-sequencing (GBS)

Christian Siadjeu
Eike Mayland-Quellhorst
Dirk C. Albach

December 2018

Abstract Background Yams (Dioscorea spp.) are economically important food for millions of people in ...

Additional file 1: of Molecular basis of African yam domestication: analyses of selection point to root development, starch biosynthesis, and photosynthesis related genes

Roland Akakpo (4511170)
Nora Scarcelli (219573)
Hana Chaïr (3323121)
Alexandre Dansi (4511167)
Gustave Djedatin (4511164)
Anne-Céline Thuillet (222194)
Bénédicte Rhoné (3192054)
Olivier François (39338)
Karine Alix (68916)
Yves Vigouroux (219609)

October 2017

We assess if the mapping of genomic DNA reads on a transcriptome reference could impact SNP calling ...

Additional file 1: Tables S1âS20. of Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination

Muluneh Tamiru (432601)
Satoshi Natsume (432603)
Hiroki Takagi (432600)
Benjamen White (4447021)
Hiroki Yaegashi (432604)
Motoki Shimizu (3418073)
Kentaro Yoshida (165749)
Aiko Uemura (432609)
Kaori Oikawa (4447015)
Akira Abe (432602)
Naoya Urasaki (151017)
Hideo Matsumura (151047)
Pachakkil Babil (4447024)
Shinsuke Yamanaka (3368720)
Ryo Matsumoto (527418)
Satoru Muranaka (439782)
Gezahegn Girma (3486440)
Antonio Lopez-Montes (4447030)
Melaku Gedil (3486449)
Ranjana Bhattacharjee (776605)
Michael Abberton (4447027)
P. Kumar (16689)
Ismail Rabbi (3486452)
Mai Tsujimura (3450446)
Toru Terachi (60364)
Wilfried Haerty (3539540)
Manuel Corpas (376987)
Sophien Kamoun (6132)
GĂźnter Kahl (4447072)
Hiroko Takagi (4447018)
Robert Asiedu (776606)
Ryohei Terauchi (165768)

September 2017

Supplementary data including world yam production statistics [94] (Table S1), summary of genome sequ...

Genetic and phenotypic diversity in a germplasm working collection of cultivated tropical yams (Dioscorea spp.)

Sartie, A.M.
Asiedu, Robert
Franco, J.

October 2016

Published Online: 7 February, 2012A working collection of yam (Dioscoreaspp.) comprising 53 landrace...

Additional file 5: Supplemental dataset S3. of Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination

Muluneh Tamiru (432601)
Satoshi Natsume (432603)
Hiroki Takagi (432600)
Benjamen White (4447021)
Hiroki Yaegashi (432604)
Motoki Shimizu (3418073)
Kentaro Yoshida (165749)
Aiko Uemura (432609)
Kaori Oikawa (4447015)
Akira Abe (432602)
Naoya Urasaki (151017)
Hideo Matsumura (151047)
Pachakkil Babil (4447024)
Shinsuke Yamanaka (3368720)
Ryo Matsumoto (527418)
Satoru Muranaka (439782)
Gezahegn Girma (3486440)
Antonio Lopez-Montes (4447030)
Melaku Gedil (3486449)
Ranjana Bhattacharjee (776605)
Michael Abberton (4447027)
P. Kumar (16689)
Ismail Rabbi (3486452)
Mai Tsujimura (3450446)
Toru Terachi (60364)
Wilfried Haerty (3539540)
Manuel Corpas (376987)
Sophien Kamoun (6132)
GĂźnter Kahl (4447072)
Hiroko Takagi (4447018)
Robert Asiedu (776606)
Ryohei Terauchi (165768)

September 2017

Functional annotation of D. rotundata genes conserved between D. rotundata and at least one other an...

Additional file 3: Supplemental dataset S1. of Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination

Muluneh Tamiru (432601)
Satoshi Natsume (432603)
Hiroki Takagi (432600)
Benjamen White (4447021)
Hiroki Yaegashi (432604)
Motoki Shimizu (3418073)
Kentaro Yoshida (165749)
Aiko Uemura (432609)
Kaori Oikawa (4447015)
Akira Abe (432602)
Naoya Urasaki (151017)
Hideo Matsumura (151047)
Pachakkil Babil (4447024)
Shinsuke Yamanaka (3368720)
Ryo Matsumoto (527418)
Satoru Muranaka (439782)
Gezahegn Girma (3486440)
Antonio Lopez-Montes (4447030)
Melaku Gedil (3486449)
Ranjana Bhattacharjee (776605)
Michael Abberton (4447027)
P. Kumar (16689)
Ismail Rabbi (3486452)
Mai Tsujimura (3450446)
Toru Terachi (60364)
Wilfried Haerty (3539540)
Manuel Corpas (376987)
Sophien Kamoun (6132)
GĂźnter Kahl (4447072)
Hiroko Takagi (4447018)
Robert Asiedu (776606)
Ryohei Terauchi (165768)

September 2017

List of the 26,198 protein coding genes predicted in the D. rotundata genome. (XLSX 1480 kb

Understanding the genetic diversity and population structure of yam (Dioscorea alata L.) using microsatellite markers.

Gemma Arnau
Ranjana Bhattacharjee
Sheela Mn
Hana Chair
Roger Malapa
Vincent Lebot
Abraham K
Xavier Perrier
Dalila Petro
Laurent Penet
Claudie Pavis

January 2017

Yams (Dioscorea sp.) are staple food crops for millions of people in tropical and subtropical region...

Understanding the genetic diversity and population structure of Yam (Dioscorea alata L.) using microsatellite markers

Penet, Laurent

January 2017

Yams (Dioscorea sp.) are staple food crops for millions of people in tropical and subtropical region...

Next generation sequencing based genotyping, cytometry and phenotyping for understanding diversity and evolution of guinea yams

Girma, G.
Hyma, K.E.
Asiedu, Robert
Mitchell, S.E.
Gedil, M.
Spillane, Charles

July 2016

Published online 1 July 2014Key message Genotyping by sequencing (GBS) is used to understand the...

RESEARCH ARTICLE Evolution and Phylogenetic Diversity of Yam Species (Dioscorea spp.): Implication for Conservation and Agricultural Practices

Marie Florence S
Rine Ngo Ngwe
Denis Ndoumou Omokolo
Simon Joly

August 2016

Yams (Dioscorea spp.) consist of approximately 600 species. Presently, these species are threatened ...

Next-generation genomics-assisted characterization of genetic and phenotypic diversity in yams (Dioscorea spp) to support conservation and breeding for food security

Tessema, Gezahegn Girma

Yams (Dioscorea spp) are staple edible tuber food crop, a favored source of medicinal plants with so...

Additional file 1: of Genetic diversity and population structure of trifoliate yam (Dioscorea dumetorum Kunth) in Cameroon revealed by genotyping-by-sequencing (GBS)

Christian Siadjeu (6100808)
Eike Mayland-Quellhorst (3292008)
Dirk Albach (2611903)

December 2018

Figure S1. Phylogenetic relationships within D. dumetorum based on multilocus concatenated SNP seque...

Additional file 6: of Genetic diversity and population structure of trifoliate yam (Dioscorea dumetorum Kunth) in Cameroon revealed by genotyping-by-sequencing (GBS)

Christian Siadjeu (6100808)
Eike Mayland-Quellhorst (3292008)
Dirk Albach (2611903)

December 2018

Figure S4. Maximum likelihood tree of the inferred gene flow within D. dumetorum species with no gen...

Additional file 2: of Genetic diversity and population structure of trifoliate yam (Dioscorea dumetorum Kunth) in Cameroon revealed by genotyping-by-sequencing (GBS)

Christian Siadjeu (6100808)
Eike Mayland-Quellhorst (3292008)
Dirk Albach (2611903)

December 2018

Figure S2. Estimates of the model evidence for Kâ=â2:5 using TI estimator a) log-evidence and b)...

Additional file 5: of Genetic diversity and population structure of trifoliate yam (Dioscorea dumetorum Kunth) in Cameroon revealed by genotyping-by-sequencing (GBS)

Christian Siadjeu (6100808)
Eike Mayland-Quellhorst (3292008)
Dirk Albach (2611903)

December 2018

Edges, weight of migrations (8 and 9) and likelihood for migrations 0:9. (TREEOUT 1 kb

Genetic diversity and population structure of trifoliate yam (Dioscorea dumetorum Kunth) in Cameroon revealed by genotyping-by-sequencing (GBS)

Christian Siadjeu
Eike Mayland-Quellhorst
Dirk C. Albach

December 2018

Abstract Background Yams (Dioscorea spp.) are economically important food for millions of people in ...

Additional file 1: of Molecular basis of African yam domestication: analyses of selection point to root development, starch biosynthesis, and photosynthesis related genes

Roland Akakpo (4511170)
Nora Scarcelli (219573)
Hana Chaïr (3323121)
Alexandre Dansi (4511167)
Gustave Djedatin (4511164)
Anne-Céline Thuillet (222194)
Bénédicte Rhoné (3192054)
Olivier François (39338)
Karine Alix (68916)
Yves Vigouroux (219609)

October 2017

We assess if the mapping of genomic DNA reads on a transcriptome reference could impact SNP calling ...

Additional file 1: Tables S1âS20. of Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination

Muluneh Tamiru (432601)
Satoshi Natsume (432603)
Hiroki Takagi (432600)
Benjamen White (4447021)
Hiroki Yaegashi (432604)
Motoki Shimizu (3418073)
Kentaro Yoshida (165749)
Aiko Uemura (432609)
Kaori Oikawa (4447015)
Akira Abe (432602)
Naoya Urasaki (151017)
Hideo Matsumura (151047)
Pachakkil Babil (4447024)
Shinsuke Yamanaka (3368720)
Ryo Matsumoto (527418)
Satoru Muranaka (439782)
Gezahegn Girma (3486440)
Antonio Lopez-Montes (4447030)
Melaku Gedil (3486449)
Ranjana Bhattacharjee (776605)
Michael Abberton (4447027)
P. Kumar (16689)
Ismail Rabbi (3486452)
Mai Tsujimura (3450446)
Toru Terachi (60364)
Wilfried Haerty (3539540)
Manuel Corpas (376987)
Sophien Kamoun (6132)
GĂźnter Kahl (4447072)
Hiroko Takagi (4447018)
Robert Asiedu (776606)
Ryohei Terauchi (165768)

September 2017

Supplementary data including world yam production statistics [94] (Table S1), summary of genome sequ...

Genetic and phenotypic diversity in a germplasm working collection of cultivated tropical yams (Dioscorea spp.)

Sartie, A.M.
Asiedu, Robert
Franco, J.

October 2016

Published Online: 7 February, 2012A working collection of yam (Dioscoreaspp.) comprising 53 landrace...

Additional file 5: Supplemental dataset S3. of Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination

Muluneh Tamiru (432601)
Satoshi Natsume (432603)
Hiroki Takagi (432600)
Benjamen White (4447021)
Hiroki Yaegashi (432604)
Motoki Shimizu (3418073)
Kentaro Yoshida (165749)
Aiko Uemura (432609)
Kaori Oikawa (4447015)
Akira Abe (432602)
Naoya Urasaki (151017)
Hideo Matsumura (151047)
Pachakkil Babil (4447024)
Shinsuke Yamanaka (3368720)
Ryo Matsumoto (527418)
Satoru Muranaka (439782)
Gezahegn Girma (3486440)
Antonio Lopez-Montes (4447030)
Melaku Gedil (3486449)
Ranjana Bhattacharjee (776605)
Michael Abberton (4447027)
P. Kumar (16689)
Ismail Rabbi (3486452)
Mai Tsujimura (3450446)
Toru Terachi (60364)
Wilfried Haerty (3539540)
Manuel Corpas (376987)
Sophien Kamoun (6132)
GĂźnter Kahl (4447072)
Hiroko Takagi (4447018)
Robert Asiedu (776606)
Ryohei Terauchi (165768)

September 2017

Functional annotation of D. rotundata genes conserved between D. rotundata and at least one other an...

Additional file 3: Supplemental dataset S1. of Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination

Muluneh Tamiru (432601)
Satoshi Natsume (432603)
Hiroki Takagi (432600)
Benjamen White (4447021)
Hiroki Yaegashi (432604)
Motoki Shimizu (3418073)
Kentaro Yoshida (165749)
Aiko Uemura (432609)
Kaori Oikawa (4447015)
Akira Abe (432602)
Naoya Urasaki (151017)
Hideo Matsumura (151047)
Pachakkil Babil (4447024)
Shinsuke Yamanaka (3368720)
Ryo Matsumoto (527418)
Satoru Muranaka (439782)
Gezahegn Girma (3486440)
Antonio Lopez-Montes (4447030)
Melaku Gedil (3486449)
Ranjana Bhattacharjee (776605)
Michael Abberton (4447027)
P. Kumar (16689)
Ismail Rabbi (3486452)
Mai Tsujimura (3450446)
Toru Terachi (60364)
Wilfried Haerty (3539540)
Manuel Corpas (376987)
Sophien Kamoun (6132)
GĂźnter Kahl (4447072)
Hiroko Takagi (4447018)
Robert Asiedu (776606)
Ryohei Terauchi (165768)

September 2017

List of the 26,198 protein coding genes predicted in the D. rotundata genome. (XLSX 1480 kb

Understanding the genetic diversity and population structure of yam (Dioscorea alata L.) using microsatellite markers.

Gemma Arnau
Ranjana Bhattacharjee
Sheela Mn
Hana Chair
Roger Malapa
Vincent Lebot
Abraham K
Xavier Perrier
Dalila Petro
Laurent Penet
Claudie Pavis

January 2017

Yams (Dioscorea sp.) are staple food crops for millions of people in tropical and subtropical region...

Understanding the genetic diversity and population structure of Yam (Dioscorea alata L.) using microsatellite markers

Penet, Laurent

January 2017

Yams (Dioscorea sp.) are staple food crops for millions of people in tropical and subtropical region...

Next generation sequencing based genotyping, cytometry and phenotyping for understanding diversity and evolution of guinea yams

Girma, G.
Hyma, K.E.
Asiedu, Robert
Mitchell, S.E.
Gedil, M.
Spillane, Charles

July 2016

Published online 1 July 2014Key message Genotyping by sequencing (GBS) is used to understand the...

RESEARCH ARTICLE Evolution and Phylogenetic Diversity of Yam Species (Dioscorea spp.): Implication for Conservation and Agricultural Practices

Marie Florence S
Rine Ngo Ngwe
Denis Ndoumou Omokolo
Simon Joly

August 2016

Yams (Dioscorea spp.) consist of approximately 600 species. Presently, these species are threatened ...

Next-generation genomics-assisted characterization of genetic and phenotypic diversity in yams (Dioscorea spp) to support conservation and breeding for food security

Tessema, Gezahegn Girma

Yams (Dioscorea spp) are staple edible tuber food crop, a favored source of medicinal plants with so...

Additional file 3: of Genetic diversity and population structure of trifoliate yam (Dioscorea dumetorum Kunth) in Cameroon revealed by genotyping-by-sequencing (GBS)

Abstract

Extracted data

Additional file 3: of Genetic diversity and population structure of trifoliate yam (Dioscorea dumetorum Kunth) in Cameroon revealed by genotyping-by-sequencing (GBS)

Abstract

Extracted data

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