Additional file 7: of Genome-wide analysis of consistently RNA edited sites in human blood reveals interactions with mRNA processing genes and suggests correlations with cell types and biological variables

Additional file 16: Table S7. of Shared genetic control of expression and methylation in peripheral blood

Konstantin Shakhbazov (747072)
Joseph Powell (3400100)
Gibran Hemani (208828)
Anjali Henders (3400097)
Nicholas Martin (254696)
Peter Visscher (3400094)
Grant Montgomery (16569)
Allan McRae (3400103)

April 2016

Results of the association analysis between shared e/mSNPs and same chromosome probe pairs with a sh...

Additional file 1: of Conserved regulation of RNA processing in somatic cell reprogramming

Alexander Kanitz (121360)
Afzal Syed (6286067)
Keisuke Kaji (403022)
Mihaela Zavolan (16626)

February 2019

Gene set enrichment analysis of SRP016568. The file contains an XLSX spreadsheet summarizing the top...

Data_Sheet_1_Genomic Positional Dissection of RNA Editomes in Tumor and Normal Samples.ZIP

Michael Chigaev (6486260)
Hui Yu (27723)
David C. Samuels (109855)
Quanhu Sheng (448059)
Olufunmilola Oyebamiji (6486263)
Scott Ness (3695674)
Wei Yue (230910)
Ying-yong Zhao (6423161)
Yan Guo (83742)

March 2019

RNA editing is phenomenon that occurs in both protein coding and non-coding RNAs. Increasing evidenc...

Additional file 2: of Genome-wide analysis of consistently RNA edited sites in human blood reveals interactions with mRNA processing genes and suggests correlations with cell types and biological variables

Edoardo Giacopuzzi (138370)
Massimo Gennarelli (239868)
Chiara Sacco (6158747)
Alice Filippini (686510)
Jessica Mingardi (4167928)
Chiara Magri (239837)
Alessandro Barbon (204192)

December 2018

Detailed statistics for the 2079 editing sites considered in the study and overlap with miRNA bindin...

Additional file 5: of Genome-wide analysis of consistently RNA edited sites in human blood reveals interactions with mRNA processing genes and suggests correlations with cell types and biological variables

Edoardo Giacopuzzi (138370)
Massimo Gennarelli (239868)
Chiara Sacco (6158747)
Alice Filippini (686510)
Jessica Mingardi (4167928)
Chiara Magri (239837)
Alessandro Barbon (204192)

December 2018

Node properties in the protein-protein interaction network including proteins encoded by genes assoc...

Additional file 4: of Genome-wide analysis of consistently RNA edited sites in human blood reveals interactions with mRNA processing genes and suggests correlations with cell types and biological variables

Edoardo Giacopuzzi (138370)
Massimo Gennarelli (239868)
Chiara Sacco (6158747)
Alice Filippini (686510)
Jessica Mingardi (4167928)
Chiara Magri (239837)
Alessandro Barbon (204192)

December 2018

Complete results of robust regression between CES total editing rate and gene expression levels wher...

Additional file 1: of Genome-wide analysis of consistently RNA edited sites in human blood reveals interactions with mRNA processing genes and suggests correlations with cell types and biological variables

Edoardo Giacopuzzi (138370)
Massimo Gennarelli (239868)
Chiara Sacco (6158747)
Alice Filippini (686510)
Jessica Mingardi (4167928)
Chiara Magri (239837)
Alessandro Barbon (204192)

December 2018

Table S1. Summary statistics for the 33 highly edited sites. Table S2. Cell composition variables as...

Additional file 3: Figure S1. of Population and allelic variation of A-to-I RNA editing in human transcriptomes

Eddie Park (711401)
Jiguang Guo (4285918)
Shihao Shen (270018)
Levon Demirdjian (4285915)
Ying Wu (19057)
Lan Lin (255741)
Yi Xing (17517)

July 2017

Representative Sanger sequencing chromatograms of the genomic DNAs of four RNA editing sites to conf...

Genome-wide analysis of consistently RNA edited sites in human blood reveals interactions with mRNA processing genes and suggests correlations with cell types and biological variables

Edoardo Giacopuzzi
Massimo Gennarelli
Chiara Sacco
Alice Filippini
Jessica Mingardi
Chiara Magri
Alessandro Barbon

December 2018

Abstract Background A-to-I RNA editing is a co−/post-transcriptional modification catalyzed by ADAR ...

Additional file 11: Figure S5. of A multi-omic analysis of human naĂŻve CD4+ T cells

Christopher Mitchell (3253833)
Derese Getnet (174411)
Min-Sik Kim (421554)
Srikanth Manda (3427979)
Praveen Kumar (8242)
Tai-Chung Huang (841150)
Sneha Pinto (3427976)
Raja Nirujogi (3427955)
Mio Iwasaki (2007559)
Patrick Shaw (2904647)
Xinyan Wu (314562)
Jun Zhong (236780)
Raghothama Chaerkady (156766)
Arivusudar Marimuthu (265325)
Babylakshmi Muthusamy (2131045)
Nandini Sahasrabuddhe (3427958)
Rajesh Raju (771787)
Caitlyn Bowman (3427973)
Ludmila Danilova (3427982)
Jevon Cutler (3427964)
Dhanashree Kelkar (1590292)
Charles Drake (3427961)
T. Prasad (3427985)
Luigi Marchionni (363972)
Peter Murakami (171557)
Alan Scott (3427967)
Leming Shi (22343)
Jean Thierry-Mieg (2989)
Danielle Thierry-Mieg (2990)
Rafael Irizarry (6337)
Leslie Cope (49815)
Yasushi Ishihama (44929)
Charles Wang (242565)
Harsha Gowda (1321746)
Akhilesh Pandey (14293)

November 2015

Strategy employed for determining potential RNA editing sites . The workflow that was followed to fi...

Comparative analysis of genomic sequence dependent and sequence-independent approaches to identify RNA editing sites in human primary monocytes / Leong Wai Mun

Leong , Wai Mun

June 2018

RNA editing is an enzyme-mediated transcriptional alteration mechanism in eukaryotic cells that chan...

Population and allelic variation of A-to-I RNA editing in human transcriptomes.

Park, Eddie
Guo, Jiguang
Shen, Shihao
Demirdjian, Levon
Wu, Ying Nian
Lin, Lan
Xing, Yi

July 2017

BackgroundA-to-I RNA editing is an important step in RNA processing in which specific adenosines in ...

Additional file 1: of Genome-wide identification of RNA editing in seven porcine tissues by matched DNA and RNA high-throughput sequencing

Yuebo Zhang (595294)
Longchao Zhang (465233)
Jingwei Yue (4439236)
Xia Wei (2063044)
Ligang Wang (347845)
Xin Liu (43569)
Hongmei Gao (240295)
Xinhua Hou (108350)
Fuping Zhao (389140)
Hua Yan (211621)
Lixian Wang (465239)

March 2019

Figure S1. Overview of the experimental design. Figure S2. Results of the Sanger sequencing validati...

Global analysis of A-to-I RNA editing reveals association with common disease variants

Franzen, Oscar
Ermel, Raili
Sukhavasi, Katyayani
Jain, Rajeev
Jain, Anamika
Betsholtz, Christer
Giannarelli, Chiara
Kovacic, Jason C.
Ruusalepp, Arno
Skogsberg, Josefin
Hao, Ke
Schadt, Eric E.
Bjoerkegren, Johan L. M.

January 2018

RNA editing modifies transcripts and may alter their regulation or function. In humans, the most com...

Genome-wide association study results.

Shu-Ping Fu (549948)
Su-Yun He (549949)
Bin Xu (10691)
Chen-Jun Hu (549950)
Sheng-Feng Lu (549951)
Wei-Xing Shen (549952)
Yan Huang (46805)
Hao Hong (337751)
Qian Li (114642)
Ning Wang (108353)
Xuan-Liang Liu (549953)
Fanrong Liang (172431)
Bing-Mei Zhu (549954)

April 2014

<p>At the end of EA treatment for 7 days, the total RNA was extracted from the harvested hearts for ...

Additional file 16: Table S7. of Shared genetic control of expression and methylation in peripheral blood

Konstantin Shakhbazov (747072)
Joseph Powell (3400100)
Gibran Hemani (208828)
Anjali Henders (3400097)
Nicholas Martin (254696)
Peter Visscher (3400094)
Grant Montgomery (16569)
Allan McRae (3400103)

April 2016

Results of the association analysis between shared e/mSNPs and same chromosome probe pairs with a sh...

Additional file 1: of Conserved regulation of RNA processing in somatic cell reprogramming

Alexander Kanitz (121360)
Afzal Syed (6286067)
Keisuke Kaji (403022)
Mihaela Zavolan (16626)

February 2019

Gene set enrichment analysis of SRP016568. The file contains an XLSX spreadsheet summarizing the top...

Data_Sheet_1_Genomic Positional Dissection of RNA Editomes in Tumor and Normal Samples.ZIP

Michael Chigaev (6486260)
Hui Yu (27723)
David C. Samuels (109855)
Quanhu Sheng (448059)
Olufunmilola Oyebamiji (6486263)
Scott Ness (3695674)
Wei Yue (230910)
Ying-yong Zhao (6423161)
Yan Guo (83742)

March 2019

RNA editing is phenomenon that occurs in both protein coding and non-coding RNAs. Increasing evidenc...

Additional file 2: of Genome-wide analysis of consistently RNA edited sites in human blood reveals interactions with mRNA processing genes and suggests correlations with cell types and biological variables

Edoardo Giacopuzzi (138370)
Massimo Gennarelli (239868)
Chiara Sacco (6158747)
Alice Filippini (686510)
Jessica Mingardi (4167928)
Chiara Magri (239837)
Alessandro Barbon (204192)

December 2018

Detailed statistics for the 2079 editing sites considered in the study and overlap with miRNA bindin...

Additional file 5: of Genome-wide analysis of consistently RNA edited sites in human blood reveals interactions with mRNA processing genes and suggests correlations with cell types and biological variables

Edoardo Giacopuzzi (138370)
Massimo Gennarelli (239868)
Chiara Sacco (6158747)
Alice Filippini (686510)
Jessica Mingardi (4167928)
Chiara Magri (239837)
Alessandro Barbon (204192)

December 2018

Node properties in the protein-protein interaction network including proteins encoded by genes assoc...

Additional file 4: of Genome-wide analysis of consistently RNA edited sites in human blood reveals interactions with mRNA processing genes and suggests correlations with cell types and biological variables

Edoardo Giacopuzzi (138370)
Massimo Gennarelli (239868)
Chiara Sacco (6158747)
Alice Filippini (686510)
Jessica Mingardi (4167928)
Chiara Magri (239837)
Alessandro Barbon (204192)

December 2018

Complete results of robust regression between CES total editing rate and gene expression levels wher...

Additional file 1: of Genome-wide analysis of consistently RNA edited sites in human blood reveals interactions with mRNA processing genes and suggests correlations with cell types and biological variables

Edoardo Giacopuzzi (138370)
Massimo Gennarelli (239868)
Chiara Sacco (6158747)
Alice Filippini (686510)
Jessica Mingardi (4167928)
Chiara Magri (239837)
Alessandro Barbon (204192)

December 2018

Table S1. Summary statistics for the 33 highly edited sites. Table S2. Cell composition variables as...

Additional file 3: Figure S1. of Population and allelic variation of A-to-I RNA editing in human transcriptomes

Eddie Park (711401)
Jiguang Guo (4285918)
Shihao Shen (270018)
Levon Demirdjian (4285915)
Ying Wu (19057)
Lan Lin (255741)
Yi Xing (17517)

July 2017

Representative Sanger sequencing chromatograms of the genomic DNAs of four RNA editing sites to conf...

Genome-wide analysis of consistently RNA edited sites in human blood reveals interactions with mRNA processing genes and suggests correlations with cell types and biological variables

Edoardo Giacopuzzi
Massimo Gennarelli
Chiara Sacco
Alice Filippini
Jessica Mingardi
Chiara Magri
Alessandro Barbon

December 2018

Abstract Background A-to-I RNA editing is a co−/post-transcriptional modification catalyzed by ADAR ...

Additional file 11: Figure S5. of A multi-omic analysis of human naĂŻve CD4+ T cells

Christopher Mitchell (3253833)
Derese Getnet (174411)
Min-Sik Kim (421554)
Srikanth Manda (3427979)
Praveen Kumar (8242)
Tai-Chung Huang (841150)
Sneha Pinto (3427976)
Raja Nirujogi (3427955)
Mio Iwasaki (2007559)
Patrick Shaw (2904647)
Xinyan Wu (314562)
Jun Zhong (236780)
Raghothama Chaerkady (156766)
Arivusudar Marimuthu (265325)
Babylakshmi Muthusamy (2131045)
Nandini Sahasrabuddhe (3427958)
Rajesh Raju (771787)
Caitlyn Bowman (3427973)
Ludmila Danilova (3427982)
Jevon Cutler (3427964)
Dhanashree Kelkar (1590292)
Charles Drake (3427961)
T. Prasad (3427985)
Luigi Marchionni (363972)
Peter Murakami (171557)
Alan Scott (3427967)
Leming Shi (22343)
Jean Thierry-Mieg (2989)
Danielle Thierry-Mieg (2990)
Rafael Irizarry (6337)
Leslie Cope (49815)
Yasushi Ishihama (44929)
Charles Wang (242565)
Harsha Gowda (1321746)
Akhilesh Pandey (14293)

November 2015

Strategy employed for determining potential RNA editing sites . The workflow that was followed to fi...

Comparative analysis of genomic sequence dependent and sequence-independent approaches to identify RNA editing sites in human primary monocytes / Leong Wai Mun

Leong , Wai Mun

June 2018

RNA editing is an enzyme-mediated transcriptional alteration mechanism in eukaryotic cells that chan...

Population and allelic variation of A-to-I RNA editing in human transcriptomes.

Park, Eddie
Guo, Jiguang
Shen, Shihao
Demirdjian, Levon
Wu, Ying Nian
Lin, Lan
Xing, Yi

July 2017

BackgroundA-to-I RNA editing is an important step in RNA processing in which specific adenosines in ...

Additional file 1: of Genome-wide identification of RNA editing in seven porcine tissues by matched DNA and RNA high-throughput sequencing

Yuebo Zhang (595294)
Longchao Zhang (465233)
Jingwei Yue (4439236)
Xia Wei (2063044)
Ligang Wang (347845)
Xin Liu (43569)
Hongmei Gao (240295)
Xinhua Hou (108350)
Fuping Zhao (389140)
Hua Yan (211621)
Lixian Wang (465239)

March 2019

Figure S1. Overview of the experimental design. Figure S2. Results of the Sanger sequencing validati...

Global analysis of A-to-I RNA editing reveals association with common disease variants

Franzen, Oscar
Ermel, Raili
Sukhavasi, Katyayani
Jain, Rajeev
Jain, Anamika
Betsholtz, Christer
Giannarelli, Chiara
Kovacic, Jason C.
Ruusalepp, Arno
Skogsberg, Josefin
Hao, Ke
Schadt, Eric E.
Bjoerkegren, Johan L. M.

January 2018

RNA editing modifies transcripts and may alter their regulation or function. In humans, the most com...

Genome-wide association study results.

Shu-Ping Fu (549948)
Su-Yun He (549949)
Bin Xu (10691)
Chen-Jun Hu (549950)
Sheng-Feng Lu (549951)
Wei-Xing Shen (549952)
Yan Huang (46805)
Hao Hong (337751)
Qian Li (114642)
Ning Wang (108353)
Xuan-Liang Liu (549953)
Fanrong Liang (172431)
Bing-Mei Zhu (549954)

April 2014

<p>At the end of EA treatment for 7 days, the total RNA was extracted from the harvested hearts for ...

Additional file 16: Table S7. of Shared genetic control of expression and methylation in peripheral blood

Konstantin Shakhbazov (747072)
Joseph Powell (3400100)
Gibran Hemani (208828)
Anjali Henders (3400097)
Nicholas Martin (254696)
Peter Visscher (3400094)
Grant Montgomery (16569)
Allan McRae (3400103)

April 2016

Results of the association analysis between shared e/mSNPs and same chromosome probe pairs with a sh...

Additional file 1: of Conserved regulation of RNA processing in somatic cell reprogramming

Alexander Kanitz (121360)
Afzal Syed (6286067)
Keisuke Kaji (403022)
Mihaela Zavolan (16626)

February 2019

Gene set enrichment analysis of SRP016568. The file contains an XLSX spreadsheet summarizing the top...

Data_Sheet_1_Genomic Positional Dissection of RNA Editomes in Tumor and Normal Samples.ZIP

Michael Chigaev (6486260)
Hui Yu (27723)
David C. Samuels (109855)
Quanhu Sheng (448059)
Olufunmilola Oyebamiji (6486263)
Scott Ness (3695674)
Wei Yue (230910)
Ying-yong Zhao (6423161)
Yan Guo (83742)

March 2019

RNA editing is phenomenon that occurs in both protein coding and non-coding RNAs. Increasing evidenc...

Additional file 7: of Genome-wide analysis of consistently RNA edited sites in human blood reveals interactions with mRNA processing genes and suggests correlations with cell types and biological variables

Abstract

Extracted data

Additional file 7: of Genome-wide analysis of consistently RNA edited sites in human blood reveals interactions with mRNA processing genes and suggests correlations with cell types and biological variables

Abstract

Extracted data

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