RNA-Seq data set sizes. There is a moderate correlation between the amount of bases in the used RNA-Seq data sets and the number of supported splice sites. The trend is similar for canonical (r = 0.46) and non-canonical (r = 0.43) splice site combinations. (JPG 184 kb
Genome-wide distribution of non-canonical splice sites in V. vinifera. The distribution of genes wi...
Conserved sequences around splice sites in Oryza sativa. Predicted splice site combinations observed...
BACKGROUND: Most eukaryotic genes comprise exons and introns thus requiring the precise removal of i...
Correlation of splice site frequencies with genome size. For each investigated species the number of...
Number of splice sites per species. Canonical and non-canonical splice sites were counted per specie...
Supported splice sites. Percentage of splice sites supported by RNA-Seq reads is given per species. ...
Proportion of non-canonical splice sites. The green line indicates the average (median) proportion o...
Splice site diversity per species. The occurrence of all possible splice site combinations was count...
Non-canonical splice sites in single copy genes. The occurrence of non-canonical splice sites in sin...
RNA-Seq data sets. List of Sequence Read Archive accession numbers of all included RNA-Seq data sets...
RNA-Seq based splice site validation. Schematic illustration how the splitted mapping of RNA-Seq rea...
Genome statistics. Statistical information about each analyzed genome sequence and the average value...
Similarity of the non-canonical splice site pattern across plants. The Spearman correlation coeffici...
Genome-wide distribution of non-canonical splice sites in A. thaliana. The distribution of genes wit...
Analysed data sets. List of investigated genome sequences and corresponding annotation. Md5sums are ...
Genome-wide distribution of non-canonical splice sites in V. vinifera. The distribution of genes wi...
Conserved sequences around splice sites in Oryza sativa. Predicted splice site combinations observed...
BACKGROUND: Most eukaryotic genes comprise exons and introns thus requiring the precise removal of i...
Correlation of splice site frequencies with genome size. For each investigated species the number of...
Number of splice sites per species. Canonical and non-canonical splice sites were counted per specie...
Supported splice sites. Percentage of splice sites supported by RNA-Seq reads is given per species. ...
Proportion of non-canonical splice sites. The green line indicates the average (median) proportion o...
Splice site diversity per species. The occurrence of all possible splice site combinations was count...
Non-canonical splice sites in single copy genes. The occurrence of non-canonical splice sites in sin...
RNA-Seq data sets. List of Sequence Read Archive accession numbers of all included RNA-Seq data sets...
RNA-Seq based splice site validation. Schematic illustration how the splitted mapping of RNA-Seq rea...
Genome statistics. Statistical information about each analyzed genome sequence and the average value...
Similarity of the non-canonical splice site pattern across plants. The Spearman correlation coeffici...
Genome-wide distribution of non-canonical splice sites in A. thaliana. The distribution of genes wit...
Analysed data sets. List of investigated genome sequences and corresponding annotation. Md5sums are ...
Genome-wide distribution of non-canonical splice sites in V. vinifera. The distribution of genes wi...
Conserved sequences around splice sites in Oryza sativa. Predicted splice site combinations observed...
BACKGROUND: Most eukaryotic genes comprise exons and introns thus requiring the precise removal of i...
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