RNA-Seq based splice site validation. Schematic illustration how the splitted mapping of RNA-Seq reads (arrows) over exons (red) and introns (grey) was used to validate splice sites. The read coverage depth should drop when moving from an exon into an intron. Red arrows indicate the four positions considered for this analysis. (JPG 168 kb
Similarity of the non-canonical splice site pattern across plants. The Spearman correlation coeffici...
BACKGROUND: Most eukaryotic genes comprise exons and introns thus requiring the precise removal of i...
Conserved sequences around splice sites in Oryza sativa. Predicted splice site combinations observed...
Number of splice sites per species. Canonical and non-canonical splice sites were counted per specie...
Supported splice sites. Percentage of splice sites supported by RNA-Seq reads is given per species. ...
RNA-Seq data set sizes. There is a moderate correlation between the amount of bases in the used RNA-...
Proportion of non-canonical splice sites. The green line indicates the average (median) proportion o...
Splice site diversity per species. The occurrence of all possible splice site combinations was count...
RNA-Seq data sets. List of Sequence Read Archive accession numbers of all included RNA-Seq data sets...
Correlation of splice site frequencies with genome size. For each investigated species the number of...
Analysed data sets. List of investigated genome sequences and corresponding annotation. Md5sums are ...
Genome-wide distribution of non-canonical splice sites in A. thaliana. The distribution of genes wit...
Genome statistics. Statistical information about each analyzed genome sequence and the average value...
Non-canonical splice sites in single copy genes. The occurrence of non-canonical splice sites in sin...
Genome-wide distribution of non-canonical splice sites in V. vinifera. The distribution of genes wi...
Similarity of the non-canonical splice site pattern across plants. The Spearman correlation coeffici...
BACKGROUND: Most eukaryotic genes comprise exons and introns thus requiring the precise removal of i...
Conserved sequences around splice sites in Oryza sativa. Predicted splice site combinations observed...
Number of splice sites per species. Canonical and non-canonical splice sites were counted per specie...
Supported splice sites. Percentage of splice sites supported by RNA-Seq reads is given per species. ...
RNA-Seq data set sizes. There is a moderate correlation between the amount of bases in the used RNA-...
Proportion of non-canonical splice sites. The green line indicates the average (median) proportion o...
Splice site diversity per species. The occurrence of all possible splice site combinations was count...
RNA-Seq data sets. List of Sequence Read Archive accession numbers of all included RNA-Seq data sets...
Correlation of splice site frequencies with genome size. For each investigated species the number of...
Analysed data sets. List of investigated genome sequences and corresponding annotation. Md5sums are ...
Genome-wide distribution of non-canonical splice sites in A. thaliana. The distribution of genes wit...
Genome statistics. Statistical information about each analyzed genome sequence and the average value...
Non-canonical splice sites in single copy genes. The occurrence of non-canonical splice sites in sin...
Genome-wide distribution of non-canonical splice sites in V. vinifera. The distribution of genes wi...
Similarity of the non-canonical splice site pattern across plants. The Spearman correlation coeffici...
BACKGROUND: Most eukaryotic genes comprise exons and introns thus requiring the precise removal of i...
Conserved sequences around splice sites in Oryza sativa. Predicted splice site combinations observed...