Reference transcriptome of P. pinaster zygotic embryogenesis with annotations from BRH to the proteomes of P. taeda, P. lambertiana and A. thaliana, and from homology to proteins in NCBI databases. Table S1: List of assembled transcripts, longest ORFs, and corresponding predicted proteins. Table S2: Annotation information for the predicted proteins derived from the longest ORFs. Table S3: List of short non-coding transcripts without an ORF that were excluded. (XLSX 11164âkb
Functional annotation of the whole de novo transcriptome of Persea Americana cv. Hass during fruit d...
Distribution of the sequence similarities (percentage) that were calculated for the BLAST hits. (PNG...
REVIGO TreeMap representation of GO terms enrichment analysis associated with biological process GO ...
List of all sequences of proteins in the final proteome encoded by the reference transcriptome of P....
List of proteins from P. pinaster, P. taeda and P. lambertiana clustered together according to the e...
E-value distribution of the BLAST hits resulting from the BLASTX alignment of the P. pinaster transc...
Number of proteins from P. pinaster, P. taeda and P. lambertiana clustered together according to the...
Transcripts with BRHs validated by relative RT-qPCR. The order of preference for annotating each P. ...
Distribution of species to which most transcripts were aligned when only considering the Top-BLAST h...
REVIGO TreeMap representation of GO terms enrichment analysis associated with biological process GO ...
InterProScan (IPS) results showing the number of transcripts with and without IPS as well as with GO...
REVIGO TreeMap representation of GO terms enrichment analysis associated with biological process GO ...
The functional annotation of P. pinaster transcriptome done with Blast2GO generated different charts...
REVIGO TreeMap representation of GO terms enrichment analysis associated with biological process GO ...
Figure S2. Number of differentially expressed transcripts (DETs) with a fold-change greater than 2 (...
Functional annotation of the whole de novo transcriptome of Persea Americana cv. Hass during fruit d...
Distribution of the sequence similarities (percentage) that were calculated for the BLAST hits. (PNG...
REVIGO TreeMap representation of GO terms enrichment analysis associated with biological process GO ...
List of all sequences of proteins in the final proteome encoded by the reference transcriptome of P....
List of proteins from P. pinaster, P. taeda and P. lambertiana clustered together according to the e...
E-value distribution of the BLAST hits resulting from the BLASTX alignment of the P. pinaster transc...
Number of proteins from P. pinaster, P. taeda and P. lambertiana clustered together according to the...
Transcripts with BRHs validated by relative RT-qPCR. The order of preference for annotating each P. ...
Distribution of species to which most transcripts were aligned when only considering the Top-BLAST h...
REVIGO TreeMap representation of GO terms enrichment analysis associated with biological process GO ...
InterProScan (IPS) results showing the number of transcripts with and without IPS as well as with GO...
REVIGO TreeMap representation of GO terms enrichment analysis associated with biological process GO ...
The functional annotation of P. pinaster transcriptome done with Blast2GO generated different charts...
REVIGO TreeMap representation of GO terms enrichment analysis associated with biological process GO ...
Figure S2. Number of differentially expressed transcripts (DETs) with a fold-change greater than 2 (...
Functional annotation of the whole de novo transcriptome of Persea Americana cv. Hass during fruit d...
Distribution of the sequence similarities (percentage) that were calculated for the BLAST hits. (PNG...
REVIGO TreeMap representation of GO terms enrichment analysis associated with biological process GO ...