The functional annotation of P. pinaster transcriptome done with Blast2GO generated different charts. The “data distribution” chart shows the distribution of un-blasted (with BLAST (without hits)), blasted (with BLAST hits), mapped (with mapping) and annotated (with GO annotation) transcripts over the whole transcriptome. The “GO mapping distribution” chart is a representation of the amount of GO terms assigned to each sequence during the GO Mapping step. The third chart represents the number of annotations achieved at distinct GO levels (0-to-15), listing the GO terms by biological process (P), molecular function (F) and cellular component (C). The “annotation distribution” chart shows the number of sequences annotated with different amoun...
Figure S2. Number of differentially expressed transcripts (DETs) with a fold-change greater than 2 (...
Reference transcriptome of P. pinaster zygotic embryogenesis with annotations from BRH to the proteo...
List of all sequences of proteins in the final proteome encoded by the reference transcriptome of P....
Distribution of the number of GO terms, retrieved by the Blast2GO mapping step, per database resourc...
E-value distribution of the BLAST hits resulting from the BLASTX alignment of the P. pinaster transc...
REVIGO TreeMap representation of GO terms enrichment analysis associated with biological process GO ...
REVIGO TreeMap representation of GO terms enrichment analysis associated with biological process GO ...
REVIGO TreeMap representation of GO terms enrichment analysis associated with biological process GO ...
Distribution of the sequence similarities (percentage) that were calculated for the BLAST hits. (PNG...
REVIGO TreeMap representation of GO terms enrichment analysis associated with biological process GO ...
REVIGO TreeMap representation of GO terms enrichment analysis associated with biological process GO ...
Distribution of species to which most transcripts were aligned when only considering the Top-BLAST h...
InterProScan (IPS) results showing the number of transcripts with and without IPS as well as with GO...
Differentially expressed transcripts (FC > 2; RPKM > 10) between consecutive developmental stages du...
a. Species distribution of the blastx hits for all homologous sequences against the NR database; b. ...
Figure S2. Number of differentially expressed transcripts (DETs) with a fold-change greater than 2 (...
Reference transcriptome of P. pinaster zygotic embryogenesis with annotations from BRH to the proteo...
List of all sequences of proteins in the final proteome encoded by the reference transcriptome of P....
Distribution of the number of GO terms, retrieved by the Blast2GO mapping step, per database resourc...
E-value distribution of the BLAST hits resulting from the BLASTX alignment of the P. pinaster transc...
REVIGO TreeMap representation of GO terms enrichment analysis associated with biological process GO ...
REVIGO TreeMap representation of GO terms enrichment analysis associated with biological process GO ...
REVIGO TreeMap representation of GO terms enrichment analysis associated with biological process GO ...
Distribution of the sequence similarities (percentage) that were calculated for the BLAST hits. (PNG...
REVIGO TreeMap representation of GO terms enrichment analysis associated with biological process GO ...
REVIGO TreeMap representation of GO terms enrichment analysis associated with biological process GO ...
Distribution of species to which most transcripts were aligned when only considering the Top-BLAST h...
InterProScan (IPS) results showing the number of transcripts with and without IPS as well as with GO...
Differentially expressed transcripts (FC > 2; RPKM > 10) between consecutive developmental stages du...
a. Species distribution of the blastx hits for all homologous sequences against the NR database; b. ...
Figure S2. Number of differentially expressed transcripts (DETs) with a fold-change greater than 2 (...
Reference transcriptome of P. pinaster zygotic embryogenesis with annotations from BRH to the proteo...
List of all sequences of proteins in the final proteome encoded by the reference transcriptome of P....