Additional file 4: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Rectifying Limitations On Species Delineation In Dusky Salamanders : Lineage Detection Using An Ecoregion-Drainage Sampling Regime

Beamer, David A.
NC DOCKS at East Carolina University

January 2023

The dusky salamanders (Desmognathus) constitute a large, species-rich group, and although a consider...

Population genomic evidence that stream networks structure genetic diversity in the narrowly endemic patch-nosed salamander (Urspelerpes brucei)

Pierson, Todd
Camp, Carlos
Wooten, Jessica

August 2023

Described in 2009, the Patch-nosed Salamander (Urspelerpes brucei) is a miniature species of lungles...

Data from: A genomic assessment of population structure and gene flow in an aquatic salamander identifies the roles of spatial scale, barriers, and river architecture

Murphy, Mason O.
Jones, Kara S.
Price, Steven J.
Weisrock, David W.

February 2018

Population structure and gene flow of species in lotic environments can be constrained by river netw...

Additional file 7: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Table S5. Results of demographic statistics of P. shangchengensis based on mtDNA data. (DOCX 18 kb

Additional file 2: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Table S2. Prior and hyperpriors used in Msvar based on microsatellite data. (DOCX 17 kb

Additional file 9: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Table S6. Results from Principal Components Analysis on environmental variables used in comparison o...

Additional file 5: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Table S3. Results of hierarchical AMOVA based on mtDNA and microsatellites. Groups are set as JTX an...

Additional file 1: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Table S1. Details on the primers for amplified the ND2 gene, Cyt b gene and twelve microsatellite lo...

Additional file 8: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Figure S3. Bayesian skyline plot of effective population size in P. shangchengensis based on the mtD...

Additional file 5: Figure S2. of An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the Arboreal Salamander (Aneides lugubris)

Sean Reilly (2284096)
Ammon Corl (149541)
David Wake (3577070)

November 2015

STRUCTURE Harvester results from a comparison of K = 1 to K = 10 with ten replicates per population ...

Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan
Hui Wang
Pablo Orozcoterwengel
Chao-Chao Hu
Gui-You Wu
Li-Fu Qian
Zhong-Lou Sun
Wen-Bo Shi
Peng Yan
Xiao-Bing Wu
Bao-Wei Zhang

January 2019

Abstract Background Climate oscillation may have a profound effect on species distributions, gene fl...

Additional file 3: Table S2. of An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the Arboreal Salamander (Aneides lugubris)

Sean Reilly (2284096)
Ammon Corl (149541)
David Wake (3577070)

November 2015

Divergence time estimates in millions of years (rounded to nearest 0.1 Ma) as estimated by *BEAST fo...

Additional file 4: Table S3. of An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the Arboreal Salamander (Aneides lugubris)

Sean Reilly (2284096)
Ammon Corl (149541)
David Wake (3577070)

November 2015

GenBank numbers for sequences used in genetic analyses. *-sequence of less than 200Â bp in length an...

Data from: An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the arboreal salamander (Aneides lugubris)

Reilly, Sean Bryant
Corl, Ammon
Wake, David B.

November 2015

Background: Phylogeography is an important tool that can be used to reveal cryptic biodiversity and ...

Additional file 1: Table S1. of An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the Arboreal Salamander (Aneides lugubris)

Sean Reilly (2284096)
Ammon Corl (149541)
David Wake (3577070)

November 2015

Museum voucher numbers, mtDNA clade designation, and locality information. (DOC 254 kb

Rectifying Limitations On Species Delineation In Dusky Salamanders : Lineage Detection Using An Ecoregion-Drainage Sampling Regime

Beamer, David A.
NC DOCKS at East Carolina University

January 2023

The dusky salamanders (Desmognathus) constitute a large, species-rich group, and although a consider...

Population genomic evidence that stream networks structure genetic diversity in the narrowly endemic patch-nosed salamander (Urspelerpes brucei)

Pierson, Todd
Camp, Carlos
Wooten, Jessica

August 2023

Described in 2009, the Patch-nosed Salamander (Urspelerpes brucei) is a miniature species of lungles...

Data from: A genomic assessment of population structure and gene flow in an aquatic salamander identifies the roles of spatial scale, barriers, and river architecture

Murphy, Mason O.
Jones, Kara S.
Price, Steven J.
Weisrock, David W.

February 2018

Population structure and gene flow of species in lotic environments can be constrained by river netw...

Additional file 7: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Table S5. Results of demographic statistics of P. shangchengensis based on mtDNA data. (DOCX 18 kb

Additional file 2: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Table S2. Prior and hyperpriors used in Msvar based on microsatellite data. (DOCX 17 kb

Additional file 9: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Table S6. Results from Principal Components Analysis on environmental variables used in comparison o...

Additional file 5: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Table S3. Results of hierarchical AMOVA based on mtDNA and microsatellites. Groups are set as JTX an...

Additional file 1: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Table S1. Details on the primers for amplified the ND2 gene, Cyt b gene and twelve microsatellite lo...

Additional file 8: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Figure S3. Bayesian skyline plot of effective population size in P. shangchengensis based on the mtD...

Additional file 5: Figure S2. of An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the Arboreal Salamander (Aneides lugubris)

Sean Reilly (2284096)
Ammon Corl (149541)
David Wake (3577070)

November 2015

STRUCTURE Harvester results from a comparison of K = 1 to K = 10 with ten replicates per population ...

Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan
Hui Wang
Pablo Orozcoterwengel
Chao-Chao Hu
Gui-You Wu
Li-Fu Qian
Zhong-Lou Sun
Wen-Bo Shi
Peng Yan
Xiao-Bing Wu
Bao-Wei Zhang

January 2019

Abstract Background Climate oscillation may have a profound effect on species distributions, gene fl...

Additional file 3: Table S2. of An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the Arboreal Salamander (Aneides lugubris)

Sean Reilly (2284096)
Ammon Corl (149541)
David Wake (3577070)

November 2015

Divergence time estimates in millions of years (rounded to nearest 0.1 Ma) as estimated by *BEAST fo...

Additional file 4: Table S3. of An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the Arboreal Salamander (Aneides lugubris)

Sean Reilly (2284096)
Ammon Corl (149541)
David Wake (3577070)

November 2015

GenBank numbers for sequences used in genetic analyses. *-sequence of less than 200Â bp in length an...

Data from: An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the arboreal salamander (Aneides lugubris)

Reilly, Sean Bryant
Corl, Ammon
Wake, David B.

November 2015

Background: Phylogeography is an important tool that can be used to reveal cryptic biodiversity and ...

Additional file 1: Table S1. of An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the Arboreal Salamander (Aneides lugubris)

Sean Reilly (2284096)
Ammon Corl (149541)
David Wake (3577070)

November 2015

Museum voucher numbers, mtDNA clade designation, and locality information. (DOC 254 kb

Rectifying Limitations On Species Delineation In Dusky Salamanders : Lineage Detection Using An Ecoregion-Drainage Sampling Regime

Beamer, David A.
NC DOCKS at East Carolina University

January 2023

The dusky salamanders (Desmognathus) constitute a large, species-rich group, and although a consider...

Population genomic evidence that stream networks structure genetic diversity in the narrowly endemic patch-nosed salamander (Urspelerpes brucei)

Pierson, Todd
Camp, Carlos
Wooten, Jessica

August 2023

Described in 2009, the Patch-nosed Salamander (Urspelerpes brucei) is a miniature species of lungles...

Data from: A genomic assessment of population structure and gene flow in an aquatic salamander identifies the roles of spatial scale, barriers, and river architecture

Murphy, Mason O.
Jones, Kara S.
Price, Steven J.
Weisrock, David W.

February 2018

Population structure and gene flow of species in lotic environments can be constrained by river netw...

Additional file 4: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Abstract

Extracted data

Additional file 4: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Abstract

Extracted data

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