Additional file 2: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Data from: An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the arboreal salamander (Aneides lugubris)

Reilly, Sean Bryant
Corl, Ammon
Wake, David B.

Background: Phylogeography is an important tool that can be used to reveal cryptic biodiversity and ...

Additional file 4: Table S3. of An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the Arboreal Salamander (Aneides lugubris)

Sean Reilly (2284096)
Ammon Corl (149541)
David Wake (3577070)

November 2015

GenBank numbers for sequences used in genetic analyses. *-sequence of less than 200Â bp in length an...

Rectifying Limitations On Species Delineation In Dusky Salamanders : Lineage Detection Using An Ecoregion-Drainage Sampling Regime

Beamer, David A.
NC DOCKS at East Carolina University

January 2023

The dusky salamanders (Desmognathus) constitute a large, species-rich group, and although a consider...

Additional file 5: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Table S3. Results of hierarchical AMOVA based on mtDNA and microsatellites. Groups are set as JTX an...

Additional file 4: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Table S4. Multiple runs for inferring the number of populations of P. shangchengensis with Geneland....

Additional file 7: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Table S5. Results of demographic statistics of P. shangchengensis based on mtDNA data. (DOCX 18 kb

Additional file 1: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Table S1. Details on the primers for amplified the ND2 gene, Cyt b gene and twelve microsatellite lo...

Additional file 9: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Table S6. Results from Principal Components Analysis on environmental variables used in comparison o...

Additional file 8: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Figure S3. Bayesian skyline plot of effective population size in P. shangchengensis based on the mtD...

Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan
Hui Wang
Pablo Orozcoterwengel
Chao-Chao Hu
Gui-You Wu
Li-Fu Qian
Zhong-Lou Sun
Wen-Bo Shi
Peng Yan
Xiao-Bing Wu
Bao-Wei Zhang

January 2019

Abstract Background Climate oscillation may have a profound effect on species distributions, gene fl...

Additional file 3: Table S2. of An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the Arboreal Salamander (Aneides lugubris)

Sean Reilly (2284096)
Ammon Corl (149541)
David Wake (3577070)

November 2015

Divergence time estimates in millions of years (rounded to nearest 0.1 Ma) as estimated by *BEAST fo...

Additional file 1: Table S1. of An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the Arboreal Salamander (Aneides lugubris)

Sean Reilly (2284096)
Ammon Corl (149541)
David Wake (3577070)

November 2015

Museum voucher numbers, mtDNA clade designation, and locality information. (DOC 254 kb

Additional file 5: Figure S2. of An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the Arboreal Salamander (Aneides lugubris)

Sean Reilly (2284096)
Ammon Corl (149541)
David Wake (3577070)

November 2015

STRUCTURE Harvester results from a comparison of K = 1 to K = 10 with ten replicates per population ...

Additional file 3: Table S3. of Geologic events coupled with Pleistocene climatic oscillations drove genetic variation of Omei treefrog (Rhacophorus omeimontis) in southern China

Jun Li (6494)
Mian Zhao (3452489)
Shichao Wei (3452486)
Zhenhua Luo (325996)
Hua Wu (2707)

December 2015

a. Hierarchical AMOVA analysis based on mtDNA sequences. b. Hierarchical AMOVA analysis based on mic...

Additional file 2: Table S2. of Geologic events coupled with Pleistocene climatic oscillations drove genetic variation of Omei treefrog (Rhacophorus omeimontis) in southern China

Jun Li (6494)
Mian Zhao (3452489)
Shichao Wei (3452486)
Zhenhua Luo (325996)
Hua Wu (2707)

December 2015

Distribution of combined mtDNA sequence haplotypes in seven populations. (DOC 71 kb

Data from: An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the arboreal salamander (Aneides lugubris)

Reilly, Sean Bryant
Corl, Ammon
Wake, David B.

Background: Phylogeography is an important tool that can be used to reveal cryptic biodiversity and ...

Additional file 4: Table S3. of An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the Arboreal Salamander (Aneides lugubris)

Sean Reilly (2284096)
Ammon Corl (149541)
David Wake (3577070)

November 2015

GenBank numbers for sequences used in genetic analyses. *-sequence of less than 200Â bp in length an...

Rectifying Limitations On Species Delineation In Dusky Salamanders : Lineage Detection Using An Ecoregion-Drainage Sampling Regime

Beamer, David A.
NC DOCKS at East Carolina University

January 2023

The dusky salamanders (Desmognathus) constitute a large, species-rich group, and although a consider...

Additional file 5: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Table S3. Results of hierarchical AMOVA based on mtDNA and microsatellites. Groups are set as JTX an...

Additional file 4: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Table S4. Multiple runs for inferring the number of populations of P. shangchengensis with Geneland....

Additional file 7: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Table S5. Results of demographic statistics of P. shangchengensis based on mtDNA data. (DOCX 18 kb

Additional file 1: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Table S1. Details on the primers for amplified the ND2 gene, Cyt b gene and twelve microsatellite lo...

Additional file 9: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Table S6. Results from Principal Components Analysis on environmental variables used in comparison o...

Additional file 8: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan (22600)
Hui Wang (30400)
Pablo Orozcoterwengel (6173288)
Chao-Chao Hu (6173291)
Gui-You Wu (6173294)
Li-Fu Qian (6173297)
Zhong-Lou Sun (6173300)
Wen-Bo Shi (2068600)
Peng Yan (465646)
Xiao-Bing Wu (553613)
Bao-Wei Zhang (6173303)

January 2019

Figure S3. Bayesian skyline plot of effective population size in P. shangchengensis based on the mtD...

Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Tao Pan
Hui Wang
Pablo Orozcoterwengel
Chao-Chao Hu
Gui-You Wu
Li-Fu Qian
Zhong-Lou Sun
Wen-Bo Shi
Peng Yan
Xiao-Bing Wu
Bao-Wei Zhang

January 2019

Abstract Background Climate oscillation may have a profound effect on species distributions, gene fl...

Additional file 3: Table S2. of An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the Arboreal Salamander (Aneides lugubris)

Sean Reilly (2284096)
Ammon Corl (149541)
David Wake (3577070)

November 2015

Divergence time estimates in millions of years (rounded to nearest 0.1 Ma) as estimated by *BEAST fo...

Additional file 1: Table S1. of An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the Arboreal Salamander (Aneides lugubris)

Sean Reilly (2284096)
Ammon Corl (149541)
David Wake (3577070)

November 2015

Museum voucher numbers, mtDNA clade designation, and locality information. (DOC 254 kb

Additional file 5: Figure S2. of An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the Arboreal Salamander (Aneides lugubris)

Sean Reilly (2284096)
Ammon Corl (149541)
David Wake (3577070)

November 2015

STRUCTURE Harvester results from a comparison of K = 1 to K = 10 with ten replicates per population ...

Additional file 3: Table S3. of Geologic events coupled with Pleistocene climatic oscillations drove genetic variation of Omei treefrog (Rhacophorus omeimontis) in southern China

Jun Li (6494)
Mian Zhao (3452489)
Shichao Wei (3452486)
Zhenhua Luo (325996)
Hua Wu (2707)

December 2015

a. Hierarchical AMOVA analysis based on mtDNA sequences. b. Hierarchical AMOVA analysis based on mic...

Additional file 2: Table S2. of Geologic events coupled with Pleistocene climatic oscillations drove genetic variation of Omei treefrog (Rhacophorus omeimontis) in southern China

Jun Li (6494)
Mian Zhao (3452489)
Shichao Wei (3452486)
Zhenhua Luo (325996)
Hua Wu (2707)

December 2015

Distribution of combined mtDNA sequence haplotypes in seven populations. (DOC 71 kb

Data from: An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the arboreal salamander (Aneides lugubris)

Reilly, Sean Bryant
Corl, Ammon
Wake, David B.

Background: Phylogeography is an important tool that can be used to reveal cryptic biodiversity and ...

Additional file 4: Table S3. of An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the Arboreal Salamander (Aneides lugubris)

Sean Reilly (2284096)
Ammon Corl (149541)
David Wake (3577070)

November 2015

GenBank numbers for sequences used in genetic analyses. *-sequence of less than 200Â bp in length an...

Rectifying Limitations On Species Delineation In Dusky Salamanders : Lineage Detection Using An Ecoregion-Drainage Sampling Regime

Beamer, David A.
NC DOCKS at East Carolina University

January 2023

The dusky salamanders (Desmognathus) constitute a large, species-rich group, and although a consider...

Additional file 2: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Abstract

Extracted data

Additional file 2: of Long-term sky islands generate highly divergent lineages of a narrowly distributed stream salamander (Pachyhynobius shangchengensis) in mid-latitude mountains of East Asia

Abstract

Extracted data

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