Additional file 6: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

Additional file 7: of Rheumatoid arthritis reprograms circadian output pathways

Toryn Poolman (156231)
Julie Gibbs (6178250)
Amy Walker (238532)
Suzanna Dickson (6178244)
Laura Farrell (6309806)
James Hensman (5315399)
Alexandra Kendall (6309809)
Robert Maidstone (5646653)
Stacey Warwood (4027115)
Andrew Loudon (232871)
Magnus Rattray (40781)
Ian Bruce (43961)
Anna Nicolaou (261799)
David Ray (11501)

February 2019

Figure S4. Transcriptional regulators of AM and PM LPS regulated genes in RA. AM and PM LPS regulate...

Additional file 4: of Disrupted circadian clocks and altered tissue mechanics in primary human breast tumours

Eleanor Broadberry (5881016)
James McConnell (3487649)
Jack Williams (52430)
Nan Yang (305078)
Egor Zindy (2656738)
Angela Leek (3487679)
Rachel Waddington (5881019)
Leena Joseph (180330)
Miles Howe (3487661)
Qing-Jun Meng (179045)
Charles Streuli (3487652)

October 2018

Figure S4. Circadian clocks in breast tissue. Left - representative Per2::Luc traces from cultures o...

Additional file 7: of Age-related accrual of methylomic variability is linked to fundamental ageing mechanisms

Roderick Slieker (3404279)
Maarten van Iterson (184364)
RenĂŠ Luijk (3427208)
Marian Beekman (67140)
Daria Zhernakova (3404231)
Matthijs Moed (3404273)
Hailiang Mei (3404261)
Michiel van Galen (278743)
Patrick Deelen (187548)
Marc Bonder (3404252)
Alexandra Zhernakova (102388)
AndrĂŠ Uitterlinden (3404267)
Ettje Tigchelaar (3404243)
Coen Stehouwer (3404234)
Casper Schalkwijk (3404270)
Carla van der Kallen (3404258)
Albert Hofman (107303)
Diana van Heemst (28182)
Eco de Geus (763746)
Jenny van Dongen (109719)
Joris Deelen (188359)
Leonard van den Berg (437389)
Joyce van Meurs (3404240)
Rick Jansen (198642)
Peter ât Hoen (3427211)
Lude Franke (102406)
Cisca Wijmenga (32954)
Jan Veldink (187567)
Morris Swertz (383290)
Marleen van Greevenbroek (3404255)
Cornelia van Duijn (160701)
Dorret Boomsma (39586)
P. Slagboom (3404282)
Bastiaan Heijmans (3404276)

September 2016

a Correlation between DNA methylation and gene expression of PcG complex proteins. b Overlap between...

Additional file 4: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

Gabriel Oh (3448379)
Karolis Koncevičius (6173486)
Sasha Ebrahimi (3448385)
Matthew Carlucci (6173489)
Daniel Groot (6173492)
Akhil Nair (6173495)
Aiping Zhang (448556)
Algimantas Kriščiūnas (6173498)
Edward Oh (6173501)
Viviane Labrie (6173504)
Albert Wong (365470)
Juozas Gordevičius (6173507)
Peixin Jia (6173510)
Miki Susic (6173513)
Art Petronis (3448373)

January 2019

MEME output for oscillating cytosines in neutrophil. Motif enrichment logos and characteristics for ...

Additional file 7: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

Gabriel Oh (3448379)
Karolis Koncevičius (6173486)
Sasha Ebrahimi (3448385)
Matthew Carlucci (6173489)
Daniel Groot (6173492)
Akhil Nair (6173495)
Aiping Zhang (448556)
Algimantas Kriščiūnas (6173498)
Edward Oh (6173501)
Viviane Labrie (6173504)
Albert Wong (365470)
Juozas Gordevičius (6173507)
Peixin Jia (6173510)
Miki Susic (6173513)
Art Petronis (3448373)

January 2019

TOMTOM output for hyper-variable cytosines from populational neutrophil data. Motifs detected from s...

Additional file 5: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

Gabriel Oh (3448379)
Karolis Koncevičius (6173486)
Sasha Ebrahimi (3448385)
Matthew Carlucci (6173489)
Daniel Groot (6173492)
Akhil Nair (6173495)
Aiping Zhang (448556)
Algimantas Kriščiūnas (6173498)
Edward Oh (6173501)
Viviane Labrie (6173504)
Albert Wong (365470)
Juozas Gordevičius (6173507)
Peixin Jia (6173510)
Miki Susic (6173513)
Art Petronis (3448373)

January 2019

TOMTOM output for oscillating cytosines in neutrophil. Motifs detected from sequences flanking osc-m...

Additional file 1: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

Gabriel Oh (3448379)
Karolis Koncevičius (6173486)
Sasha Ebrahimi (3448385)
Matthew Carlucci (6173489)
Daniel Groot (6173492)
Akhil Nair (6173495)
Aiping Zhang (448556)
Algimantas Kriščiūnas (6173498)
Edward Oh (6173501)
Viviane Labrie (6173504)
Albert Wong (365470)
Juozas Gordevičius (6173507)
Peixin Jia (6173510)
Miki Susic (6173513)
Art Petronis (3448373)

January 2019

Oscillation parameters of white blood cell fractions. Counts, fractions, and oscillation p values of...

Additional file 2: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

Gabriel Oh (3448379)
Karolis Koncevičius (6173486)
Sasha Ebrahimi (3448385)
Matthew Carlucci (6173489)
Daniel Groot (6173492)
Akhil Nair (6173495)
Aiping Zhang (448556)
Algimantas Kriščiūnas (6173498)
Edward Oh (6173501)
Viviane Labrie (6173504)
Albert Wong (365470)
Juozas Gordevičius (6173507)
Peixin Jia (6173510)
Miki Susic (6173513)
Art Petronis (3448373)

January 2019

Oscillation parameters for all interrogated CpG positions. EVC p value, cosinor p value, mesor, acro...

Additional file 3: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

Gabriel Oh (3448379)
Karolis Koncevičius (6173486)
Sasha Ebrahimi (3448385)
Matthew Carlucci (6173489)
Daniel Groot (6173492)
Akhil Nair (6173495)
Aiping Zhang (448556)
Algimantas Kriščiūnas (6173498)
Edward Oh (6173501)
Viviane Labrie (6173504)
Albert Wong (365470)
Juozas Gordevičius (6173507)
Peixin Jia (6173510)
Miki Susic (6173513)
Art Petronis (3448373)

January 2019

Proportion of variance explained by oscillations at various EVCs thresholds. Number of total EVCs, p...

Additional file 6: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Alex Boomgarden (6183236)
Gabriel Sagewalker (6183239)
Aashaka Shah (6183242)
Sarah Haider (6183245)
Pramathini Patel (6183248)
Heather Wheeler (6183251)
Christine Dubowy (6183254)
Daniel Cavanaugh (6183257)

January 2019

GO term analysis of week 3 upregulated genes. List of all overrepresented GO terms associated with w...

Additional file 1: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Alex Boomgarden (6183236)
Gabriel Sagewalker (6183239)
Aashaka Shah (6183242)
Sarah Haider (6183245)
Pramathini Patel (6183248)
Heather Wheeler (6183251)
Christine Dubowy (6183254)
Daniel Cavanaugh (6183257)

January 2019

Week 2 differentially expressed genes. List of all differentially expressed genes following 2âweek...

Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

Oh, Gabriel
Koncevičius, Karolis
Ebrahimi, Sasha
Carlucci, Matthew
Groot, Daniel Erik
Nair, Akhil
Zhang, Aiping
Kriščiūnas, Algimantas
Oh, Edward S.
Labrie, Viviane
Wong, Albert H. C.
Gordevičius, Juozas
Jia, Peixin
Susic, Miki
Petronis, Artūras

January 2019

Background: Maintenance of physiological circadian rhythm plays a crucial role in human health. Nume...

Circadian Hallmarks of the Aging Epigenome

Ebrahimi, Sasha

November 2017

Circadian rhythmicity governs a remarkable array of fundamental biological functions in eukaryotes w...

Additional file 2: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Alex Boomgarden (6183236)
Gabriel Sagewalker (6183239)
Aashaka Shah (6183242)
Sarah Haider (6183245)
Pramathini Patel (6183248)
Heather Wheeler (6183251)
Christine Dubowy (6183254)
Daniel Cavanaugh (6183257)

January 2019

Week 3 differentially expressed genes. List of all differentially expressed genes following 3âweek...

Additional file 4: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Alex Boomgarden (6183236)
Gabriel Sagewalker (6183239)
Aashaka Shah (6183242)
Sarah Haider (6183245)
Pramathini Patel (6183248)
Heather Wheeler (6183251)
Christine Dubowy (6183254)
Daniel Cavanaugh (6183257)

January 2019

GO term analysis of week 2 downregulated genes. List of all overrepresented GO terms associated with...

Additional file 7: of Rheumatoid arthritis reprograms circadian output pathways

Toryn Poolman (156231)
Julie Gibbs (6178250)
Amy Walker (238532)
Suzanna Dickson (6178244)
Laura Farrell (6309806)
James Hensman (5315399)
Alexandra Kendall (6309809)
Robert Maidstone (5646653)
Stacey Warwood (4027115)
Andrew Loudon (232871)
Magnus Rattray (40781)
Ian Bruce (43961)
Anna Nicolaou (261799)
David Ray (11501)

February 2019

Figure S4. Transcriptional regulators of AM and PM LPS regulated genes in RA. AM and PM LPS regulate...

Additional file 4: of Disrupted circadian clocks and altered tissue mechanics in primary human breast tumours

Eleanor Broadberry (5881016)
James McConnell (3487649)
Jack Williams (52430)
Nan Yang (305078)
Egor Zindy (2656738)
Angela Leek (3487679)
Rachel Waddington (5881019)
Leena Joseph (180330)
Miles Howe (3487661)
Qing-Jun Meng (179045)
Charles Streuli (3487652)

October 2018

Figure S4. Circadian clocks in breast tissue. Left - representative Per2::Luc traces from cultures o...

Additional file 7: of Age-related accrual of methylomic variability is linked to fundamental ageing mechanisms

Roderick Slieker (3404279)
Maarten van Iterson (184364)
RenĂŠ Luijk (3427208)
Marian Beekman (67140)
Daria Zhernakova (3404231)
Matthijs Moed (3404273)
Hailiang Mei (3404261)
Michiel van Galen (278743)
Patrick Deelen (187548)
Marc Bonder (3404252)
Alexandra Zhernakova (102388)
AndrĂŠ Uitterlinden (3404267)
Ettje Tigchelaar (3404243)
Coen Stehouwer (3404234)
Casper Schalkwijk (3404270)
Carla van der Kallen (3404258)
Albert Hofman (107303)
Diana van Heemst (28182)
Eco de Geus (763746)
Jenny van Dongen (109719)
Joris Deelen (188359)
Leonard van den Berg (437389)
Joyce van Meurs (3404240)
Rick Jansen (198642)
Peter ât Hoen (3427211)
Lude Franke (102406)
Cisca Wijmenga (32954)
Jan Veldink (187567)
Morris Swertz (383290)
Marleen van Greevenbroek (3404255)
Cornelia van Duijn (160701)
Dorret Boomsma (39586)
P. Slagboom (3404282)
Bastiaan Heijmans (3404276)

September 2016

a Correlation between DNA methylation and gene expression of PcG complex proteins. b Overlap between...

Additional file 4: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

Gabriel Oh (3448379)
Karolis Koncevičius (6173486)
Sasha Ebrahimi (3448385)
Matthew Carlucci (6173489)
Daniel Groot (6173492)
Akhil Nair (6173495)
Aiping Zhang (448556)
Algimantas Kriščiūnas (6173498)
Edward Oh (6173501)
Viviane Labrie (6173504)
Albert Wong (365470)
Juozas Gordevičius (6173507)
Peixin Jia (6173510)
Miki Susic (6173513)
Art Petronis (3448373)

January 2019

MEME output for oscillating cytosines in neutrophil. Motif enrichment logos and characteristics for ...

Additional file 7: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

Gabriel Oh (3448379)
Karolis Koncevičius (6173486)
Sasha Ebrahimi (3448385)
Matthew Carlucci (6173489)
Daniel Groot (6173492)
Akhil Nair (6173495)
Aiping Zhang (448556)
Algimantas Kriščiūnas (6173498)
Edward Oh (6173501)
Viviane Labrie (6173504)
Albert Wong (365470)
Juozas Gordevičius (6173507)
Peixin Jia (6173510)
Miki Susic (6173513)
Art Petronis (3448373)

January 2019

TOMTOM output for hyper-variable cytosines from populational neutrophil data. Motifs detected from s...

Additional file 5: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

Gabriel Oh (3448379)
Karolis Koncevičius (6173486)
Sasha Ebrahimi (3448385)
Matthew Carlucci (6173489)
Daniel Groot (6173492)
Akhil Nair (6173495)
Aiping Zhang (448556)
Algimantas Kriščiūnas (6173498)
Edward Oh (6173501)
Viviane Labrie (6173504)
Albert Wong (365470)
Juozas Gordevičius (6173507)
Peixin Jia (6173510)
Miki Susic (6173513)
Art Petronis (3448373)

January 2019

TOMTOM output for oscillating cytosines in neutrophil. Motifs detected from sequences flanking osc-m...

Additional file 1: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

Gabriel Oh (3448379)
Karolis Koncevičius (6173486)
Sasha Ebrahimi (3448385)
Matthew Carlucci (6173489)
Daniel Groot (6173492)
Akhil Nair (6173495)
Aiping Zhang (448556)
Algimantas Kriščiūnas (6173498)
Edward Oh (6173501)
Viviane Labrie (6173504)
Albert Wong (365470)
Juozas Gordevičius (6173507)
Peixin Jia (6173510)
Miki Susic (6173513)
Art Petronis (3448373)

January 2019

Oscillation parameters of white blood cell fractions. Counts, fractions, and oscillation p values of...

Additional file 2: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

Gabriel Oh (3448379)
Karolis Koncevičius (6173486)
Sasha Ebrahimi (3448385)
Matthew Carlucci (6173489)
Daniel Groot (6173492)
Akhil Nair (6173495)
Aiping Zhang (448556)
Algimantas Kriščiūnas (6173498)
Edward Oh (6173501)
Viviane Labrie (6173504)
Albert Wong (365470)
Juozas Gordevičius (6173507)
Peixin Jia (6173510)
Miki Susic (6173513)
Art Petronis (3448373)

January 2019

Oscillation parameters for all interrogated CpG positions. EVC p value, cosinor p value, mesor, acro...

Additional file 3: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

Gabriel Oh (3448379)
Karolis Koncevičius (6173486)
Sasha Ebrahimi (3448385)
Matthew Carlucci (6173489)
Daniel Groot (6173492)
Akhil Nair (6173495)
Aiping Zhang (448556)
Algimantas Kriščiūnas (6173498)
Edward Oh (6173501)
Viviane Labrie (6173504)
Albert Wong (365470)
Juozas Gordevičius (6173507)
Peixin Jia (6173510)
Miki Susic (6173513)
Art Petronis (3448373)

January 2019

Proportion of variance explained by oscillations at various EVCs thresholds. Number of total EVCs, p...

Additional file 6: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Alex Boomgarden (6183236)
Gabriel Sagewalker (6183239)
Aashaka Shah (6183242)
Sarah Haider (6183245)
Pramathini Patel (6183248)
Heather Wheeler (6183251)
Christine Dubowy (6183254)
Daniel Cavanaugh (6183257)

January 2019

GO term analysis of week 3 upregulated genes. List of all overrepresented GO terms associated with w...

Additional file 1: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Alex Boomgarden (6183236)
Gabriel Sagewalker (6183239)
Aashaka Shah (6183242)
Sarah Haider (6183245)
Pramathini Patel (6183248)
Heather Wheeler (6183251)
Christine Dubowy (6183254)
Daniel Cavanaugh (6183257)

January 2019

Week 2 differentially expressed genes. List of all differentially expressed genes following 2âweek...

Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

Oh, Gabriel
Koncevičius, Karolis
Ebrahimi, Sasha
Carlucci, Matthew
Groot, Daniel Erik
Nair, Akhil
Zhang, Aiping
Kriščiūnas, Algimantas
Oh, Edward S.
Labrie, Viviane
Wong, Albert H. C.
Gordevičius, Juozas
Jia, Peixin
Susic, Miki
Petronis, Artūras

January 2019

Background: Maintenance of physiological circadian rhythm plays a crucial role in human health. Nume...

Circadian Hallmarks of the Aging Epigenome

Ebrahimi, Sasha

November 2017

Circadian rhythmicity governs a remarkable array of fundamental biological functions in eukaryotes w...

Additional file 2: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Alex Boomgarden (6183236)
Gabriel Sagewalker (6183239)
Aashaka Shah (6183242)
Sarah Haider (6183245)
Pramathini Patel (6183248)
Heather Wheeler (6183251)
Christine Dubowy (6183254)
Daniel Cavanaugh (6183257)

January 2019

Week 3 differentially expressed genes. List of all differentially expressed genes following 3âweek...

Additional file 4: of Chronic circadian misalignment results in reduced longevity and large-scale changes in gene expression in Drosophila

Alex Boomgarden (6183236)
Gabriel Sagewalker (6183239)
Aashaka Shah (6183242)
Sarah Haider (6183245)
Pramathini Patel (6183248)
Heather Wheeler (6183251)
Christine Dubowy (6183254)
Daniel Cavanaugh (6183257)

January 2019

GO term analysis of week 2 downregulated genes. List of all overrepresented GO terms associated with...

Additional file 7: of Rheumatoid arthritis reprograms circadian output pathways

Toryn Poolman (156231)
Julie Gibbs (6178250)
Amy Walker (238532)
Suzanna Dickson (6178244)
Laura Farrell (6309806)
James Hensman (5315399)
Alexandra Kendall (6309809)
Robert Maidstone (5646653)
Stacey Warwood (4027115)
Andrew Loudon (232871)
Magnus Rattray (40781)
Ian Bruce (43961)
Anna Nicolaou (261799)
David Ray (11501)

February 2019

Figure S4. Transcriptional regulators of AM and PM LPS regulated genes in RA. AM and PM LPS regulate...

Additional file 4: of Disrupted circadian clocks and altered tissue mechanics in primary human breast tumours

Eleanor Broadberry (5881016)
James McConnell (3487649)
Jack Williams (52430)
Nan Yang (305078)
Egor Zindy (2656738)
Angela Leek (3487679)
Rachel Waddington (5881019)
Leena Joseph (180330)
Miles Howe (3487661)
Qing-Jun Meng (179045)
Charles Streuli (3487652)

October 2018

Figure S4. Circadian clocks in breast tissue. Left - representative Per2::Luc traces from cultures o...

Additional file 7: of Age-related accrual of methylomic variability is linked to fundamental ageing mechanisms

Roderick Slieker (3404279)
Maarten van Iterson (184364)
RenĂŠ Luijk (3427208)
Marian Beekman (67140)
Daria Zhernakova (3404231)
Matthijs Moed (3404273)
Hailiang Mei (3404261)
Michiel van Galen (278743)
Patrick Deelen (187548)
Marc Bonder (3404252)
Alexandra Zhernakova (102388)
AndrĂŠ Uitterlinden (3404267)
Ettje Tigchelaar (3404243)
Coen Stehouwer (3404234)
Casper Schalkwijk (3404270)
Carla van der Kallen (3404258)
Albert Hofman (107303)
Diana van Heemst (28182)
Eco de Geus (763746)
Jenny van Dongen (109719)
Joris Deelen (188359)
Leonard van den Berg (437389)
Joyce van Meurs (3404240)
Rick Jansen (198642)
Peter ât Hoen (3427211)
Lude Franke (102406)
Cisca Wijmenga (32954)
Jan Veldink (187567)
Morris Swertz (383290)
Marleen van Greevenbroek (3404255)
Cornelia van Duijn (160701)
Dorret Boomsma (39586)
P. Slagboom (3404282)
Bastiaan Heijmans (3404276)

September 2016

a Correlation between DNA methylation and gene expression of PcG complex proteins. b Overlap between...

Additional file 6: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

Abstract

Extracted data

Additional file 6: of Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease

Abstract

Extracted data

Related items

Related items