Additional file 3: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Additional file 4: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

Anna Lewandowska-Sabat (3546806)
Silje Hansen (5045789)
Trygve Solberg (3559769)
Olav Østerås (5085830)
Bjørg Heringstad (5085827)
Preben Boysen (437280)
Ingrid Olsaker (45143)

April 2018

Table S3. The results of next generation sequencing of 20 libraries from bovine monocyte-derived mac...

Additional file 1: of Burkholderia thailandensis strain E555 is a surrogate for the investigation of Burkholderia pseudomallei replication and survival in macrophages

A. Kovacs-Simon (6704897)
C. Hemsley (6704900)
A. Scott (5558972)
J. Prior (6704906)
R. Titball (6704909)

May 2019

Figure S1. Abundance of transcripts detected in the bacterial transcriptome both at 5 h and 6 h post...

Additional file 1: of Characterization of genomic DNA of lactic acid bacteria for activation of plasmacytoid dendritic cells

Akira Horie (6670271)
Yasuyuki Tomita (4707)
Konomi Ohshio (2216653)
Daisuke Fujiwara (172605)
Toshio Fujii (6670274)

May 2019

Table S1. Primer sequences used for the amplification of CpG-rich or CpG-free fragments. Primer sequ...

Additional file 4: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix Toka (6187826)
Kiera Dunaway (3121509)
Felicia Smaltz (6187832)
Lidia Szulc-DÄbrowska (6187865)
Jenny Drnevich (170966)
Matylda Mielcarska (6187838)
Magdalena Bossowska-Nowicka (4102786)
Matthias Schweizer (259498)

January 2019

GO terms generated for poly(I:C)vs Con, CpG DNA vs Con, and poly(I:C) vs CpG DNA (XLSX 52 kb

Additional file 6: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix Toka (6187826)
Kiera Dunaway (3121509)
Felicia Smaltz (6187832)
Lidia Szulc-DÄbrowska (6187865)
Jenny Drnevich (170966)
Matylda Mielcarska (6187838)
Magdalena Bossowska-Nowicka (4102786)
Matthias Schweizer (259498)

January 2019

(A) Top Network generated from the poly(I:C)vs CpG DNA comparison. Antimicrobial response, Inflammat...

Additional file 5: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix Toka (6187826)
Kiera Dunaway (3121509)
Felicia Smaltz (6187832)
Lidia Szulc-DÄbrowska (6187865)
Jenny Drnevich (170966)
Matylda Mielcarska (6187838)
Magdalena Bossowska-Nowicka (4102786)
Matthias Schweizer (259498)

January 2019

TNF and IRF7 Upstream regulated genes by CpG and poly(I:C), respectively (XLS 35 kb

Additional file 7: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix Toka (6187826)
Kiera Dunaway (3121509)
Felicia Smaltz (6187832)
Lidia Szulc-DÄbrowska (6187865)
Jenny Drnevich (170966)
Matylda Mielcarska (6187838)
Magdalena Bossowska-Nowicka (4102786)
Matthias Schweizer (259498)

January 2019

Tables. (A) Top 5 Canonical pathways generated by Ingenuity Pathway Analysis (IPA) of differentially...

Additional file 1: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix Toka (6187826)
Kiera Dunaway (3121509)
Felicia Smaltz (6187832)
Lidia Szulc-Dąbrowska (2636815)
Jenny Drnevich (170966)
Matylda Mielcarska (6187838)
Magdalena Bossowska-Nowicka (4102786)
Matthias Schweizer (259498)

January 2019

Figure S1. PlasmoTest results from Bomac cells. Supernatants were collected from 8 subsequent passag...

Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix N. Toka
Kiera Dunaway
Felicia Smaltz
Lidia Szulc-Dąbrowska
Jenny Drnevich
Matylda Barbara Mielcarska
Magdalena Bossowska-Nowicka
Matthias Schweizer

January 2019

Abstract Background Pathogens stimulate immune functions of macrophages. Macrophages are a key senti...

Additional file 6: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

Anna Lewandowska-Sabat (3546806)
Silje Hansen (5045789)
Trygve Solberg (3559769)
Olav Østerås (5085830)
Bjørg Heringstad (5085827)
Preben Boysen (437280)
Ingrid Olsaker (45143)

April 2018

Figure S2. Principal component analysis of mapped sequence reads. Control represents sequences from ...

Additional file 3: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

Anna Lewandowska-Sabat (3546806)
Silje Hansen (5045789)
Trygve Solberg (3559769)
Olav Østerås (5085830)
Bjørg Heringstad (5085827)
Preben Boysen (437280)
Ingrid Olsaker (45143)

April 2018

Table S2. List of primers used for reverse transcription-quantitative PCR (RT-qPCR). (DOCX 14 kb

Additional file 1: of Activation of innate immune genes in caprine blood leukocytes after systemic endotoxin challenge

Ăyvind Salvesen (3399374)
Malin Reiten (3399326)
Peter Heegaard (3399332)
Michael Tranulis (3399329)
Arild Espenes (279377)
Kerstin Skovgaard (429097)
Cecilie Ersdal (3399335)

October 2016

Gene name, gene abbreviations and primer sequences used in the real time qPCR analysis. For previous...

Additional file 3: of Characterization of genomic DNA of lactic acid bacteria for activation of plasmacytoid dendritic cells

Akira Horie (6670271)
Yasuyuki Tomita (4707)
Konomi Ohshio (2216653)
Daisuke Fujiwara (172605)
Toshio Fujii (6670274)

May 2019

Figure S1. Correlation between the copy numbers of CpG motifs in 300 bp DNA fragments and IFN-α. Eac...

Additional file 3: of Transcriptomic analysis reveals specific metabolic pathways of enterohemorrhagic Escherichia coli O157:H7 in bovine digestive contents

Audrey Segura (763604)
Marine Bertoni (4924150)
Pauline Auffret (4505041)
Christophe Klopp (120981)
Olivier Bouchez (104385)
ClĂŠmence Genthon (5890628)
Alexandra Durand (507995)
Yolande Bertin (571239)
Evelyne Forano (571243)

October 2018

Â Supplemental Tables showing the COG classification of differentially expressed genes in EDL933 inc...

Additional file 2: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

Anna Lewandowska-Sabat (3546806)
Silje Hansen (5045789)
Trygve Solberg (3559769)
Olav Østerås (5085830)
Bjørg Heringstad (5085827)
Preben Boysen (437280)
Ingrid Olsaker (45143)

April 2018

Figure S1. Experimental design of reverse transcription-quantitative PCR (RT-qPCR) and microRNA sequ...

Additional file 4: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

Anna Lewandowska-Sabat (3546806)
Silje Hansen (5045789)
Trygve Solberg (3559769)
Olav Østerås (5085830)
Bjørg Heringstad (5085827)
Preben Boysen (437280)
Ingrid Olsaker (45143)

April 2018

Table S3. The results of next generation sequencing of 20 libraries from bovine monocyte-derived mac...

Additional file 1: of Burkholderia thailandensis strain E555 is a surrogate for the investigation of Burkholderia pseudomallei replication and survival in macrophages

A. Kovacs-Simon (6704897)
C. Hemsley (6704900)
A. Scott (5558972)
J. Prior (6704906)
R. Titball (6704909)

May 2019

Figure S1. Abundance of transcripts detected in the bacterial transcriptome both at 5 h and 6 h post...

Additional file 1: of Characterization of genomic DNA of lactic acid bacteria for activation of plasmacytoid dendritic cells

Akira Horie (6670271)
Yasuyuki Tomita (4707)
Konomi Ohshio (2216653)
Daisuke Fujiwara (172605)
Toshio Fujii (6670274)

May 2019

Table S1. Primer sequences used for the amplification of CpG-rich or CpG-free fragments. Primer sequ...

Additional file 4: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix Toka (6187826)
Kiera Dunaway (3121509)
Felicia Smaltz (6187832)
Lidia Szulc-DÄbrowska (6187865)
Jenny Drnevich (170966)
Matylda Mielcarska (6187838)
Magdalena Bossowska-Nowicka (4102786)
Matthias Schweizer (259498)

January 2019

GO terms generated for poly(I:C)vs Con, CpG DNA vs Con, and poly(I:C) vs CpG DNA (XLSX 52 kb

Additional file 6: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix Toka (6187826)
Kiera Dunaway (3121509)
Felicia Smaltz (6187832)
Lidia Szulc-DÄbrowska (6187865)
Jenny Drnevich (170966)
Matylda Mielcarska (6187838)
Magdalena Bossowska-Nowicka (4102786)
Matthias Schweizer (259498)

January 2019

(A) Top Network generated from the poly(I:C)vs CpG DNA comparison. Antimicrobial response, Inflammat...

Additional file 5: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix Toka (6187826)
Kiera Dunaway (3121509)
Felicia Smaltz (6187832)
Lidia Szulc-DÄbrowska (6187865)
Jenny Drnevich (170966)
Matylda Mielcarska (6187838)
Magdalena Bossowska-Nowicka (4102786)
Matthias Schweizer (259498)

January 2019

TNF and IRF7 Upstream regulated genes by CpG and poly(I:C), respectively (XLS 35 kb

Additional file 7: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix Toka (6187826)
Kiera Dunaway (3121509)
Felicia Smaltz (6187832)
Lidia Szulc-DÄbrowska (6187865)
Jenny Drnevich (170966)
Matylda Mielcarska (6187838)
Magdalena Bossowska-Nowicka (4102786)
Matthias Schweizer (259498)

January 2019

Tables. (A) Top 5 Canonical pathways generated by Ingenuity Pathway Analysis (IPA) of differentially...

Additional file 1: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix Toka (6187826)
Kiera Dunaway (3121509)
Felicia Smaltz (6187832)
Lidia Szulc-Dąbrowska (2636815)
Jenny Drnevich (170966)
Matylda Mielcarska (6187838)
Magdalena Bossowska-Nowicka (4102786)
Matthias Schweizer (259498)

January 2019

Figure S1. PlasmoTest results from Bomac cells. Supernatants were collected from 8 subsequent passag...

Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix N. Toka
Kiera Dunaway
Felicia Smaltz
Lidia Szulc-Dąbrowska
Jenny Drnevich
Matylda Barbara Mielcarska
Magdalena Bossowska-Nowicka
Matthias Schweizer

January 2019

Abstract Background Pathogens stimulate immune functions of macrophages. Macrophages are a key senti...

Additional file 6: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

Anna Lewandowska-Sabat (3546806)
Silje Hansen (5045789)
Trygve Solberg (3559769)
Olav Østerås (5085830)
Bjørg Heringstad (5085827)
Preben Boysen (437280)
Ingrid Olsaker (45143)

April 2018

Figure S2. Principal component analysis of mapped sequence reads. Control represents sequences from ...

Additional file 3: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

Anna Lewandowska-Sabat (3546806)
Silje Hansen (5045789)
Trygve Solberg (3559769)
Olav Østerås (5085830)
Bjørg Heringstad (5085827)
Preben Boysen (437280)
Ingrid Olsaker (45143)

April 2018

Table S2. List of primers used for reverse transcription-quantitative PCR (RT-qPCR). (DOCX 14 kb

Additional file 1: of Activation of innate immune genes in caprine blood leukocytes after systemic endotoxin challenge

Ăyvind Salvesen (3399374)
Malin Reiten (3399326)
Peter Heegaard (3399332)
Michael Tranulis (3399329)
Arild Espenes (279377)
Kerstin Skovgaard (429097)
Cecilie Ersdal (3399335)

October 2016

Gene name, gene abbreviations and primer sequences used in the real time qPCR analysis. For previous...

Additional file 3: of Characterization of genomic DNA of lactic acid bacteria for activation of plasmacytoid dendritic cells

Akira Horie (6670271)
Yasuyuki Tomita (4707)
Konomi Ohshio (2216653)
Daisuke Fujiwara (172605)
Toshio Fujii (6670274)

May 2019

Figure S1. Correlation between the copy numbers of CpG motifs in 300 bp DNA fragments and IFN-α. Eac...

Additional file 3: of Transcriptomic analysis reveals specific metabolic pathways of enterohemorrhagic Escherichia coli O157:H7 in bovine digestive contents

Audrey Segura (763604)
Marine Bertoni (4924150)
Pauline Auffret (4505041)
Christophe Klopp (120981)
Olivier Bouchez (104385)
ClĂŠmence Genthon (5890628)
Alexandra Durand (507995)
Yolande Bertin (571239)
Evelyne Forano (571243)

October 2018

Â Supplemental Tables showing the COG classification of differentially expressed genes in EDL933 inc...

Additional file 2: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

Anna Lewandowska-Sabat (3546806)
Silje Hansen (5045789)
Trygve Solberg (3559769)
Olav Østerås (5085830)
Bjørg Heringstad (5085827)
Preben Boysen (437280)
Ingrid Olsaker (45143)

April 2018

Figure S1. Experimental design of reverse transcription-quantitative PCR (RT-qPCR) and microRNA sequ...

Additional file 4: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

Anna Lewandowska-Sabat (3546806)
Silje Hansen (5045789)
Trygve Solberg (3559769)
Olav Østerås (5085830)
Bjørg Heringstad (5085827)
Preben Boysen (437280)
Ingrid Olsaker (45143)

April 2018

Table S3. The results of next generation sequencing of 20 libraries from bovine monocyte-derived mac...

Additional file 1: of Burkholderia thailandensis strain E555 is a surrogate for the investigation of Burkholderia pseudomallei replication and survival in macrophages

A. Kovacs-Simon (6704897)
C. Hemsley (6704900)
A. Scott (5558972)
J. Prior (6704906)
R. Titball (6704909)

May 2019

Figure S1. Abundance of transcripts detected in the bacterial transcriptome both at 5 h and 6 h post...

Additional file 1: of Characterization of genomic DNA of lactic acid bacteria for activation of plasmacytoid dendritic cells

Akira Horie (6670271)
Yasuyuki Tomita (4707)
Konomi Ohshio (2216653)
Daisuke Fujiwara (172605)
Toshio Fujii (6670274)

May 2019

Table S1. Primer sequences used for the amplification of CpG-rich or CpG-free fragments. Primer sequ...

Additional file 3: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Abstract

Extracted data

Additional file 3: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Abstract

Extracted data

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