Additional file 5: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Additional file 4: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

Anna Lewandowska-Sabat (3546806)
Silje Hansen (5045789)
Trygve Solberg (3559769)
Olav Østerås (5085830)
Bjørg Heringstad (5085827)
Preben Boysen (437280)
Ingrid Olsaker (45143)

April 2018

Table S3. The results of next generation sequencing of 20 libraries from bovine monocyte-derived mac...

Additional file 1: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

Anna Lewandowska-Sabat (3546806)
Silje Hansen (5045789)
Trygve Solberg (3559769)
Olav Østerås (5085830)
Bjørg Heringstad (5085827)
Preben Boysen (437280)
Ingrid Olsaker (45143)

April 2018

Table S1. RNA samples that were used in the study. RIN - RNA integrity number; RT-qPCR - reverse tra...

Additional file 4: of Genome wide transcriptome analysis provides bases on colonic mucosal immune system development affected by colostrum feeding strategies in neonatal calves

Zhixiong He (2833295)
Amanda Fischer (5696384)
Yang Song (88132)
Michael Steele (4391095)
Le Guan (621902)

August 2018

Clustering dendrogram of genes showing module membership in colours. (TIFF 946 kb

Additional file 4: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix Toka (6187826)
Kiera Dunaway (3121509)
Felicia Smaltz (6187832)
Lidia Szulc-DÄbrowska (6187865)
Jenny Drnevich (170966)
Matylda Mielcarska (6187838)
Magdalena Bossowska-Nowicka (4102786)
Matthias Schweizer (259498)

January 2019

GO terms generated for poly(I:C)vs Con, CpG DNA vs Con, and poly(I:C) vs CpG DNA (XLSX 52 kb

Additional file 3: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix Toka (6187826)
Kiera Dunaway (3121509)
Felicia Smaltz (6187832)
Lidia Szulc-DÄbrowska (6187865)
Jenny Drnevich (170966)
Matylda Mielcarska (6187838)
Magdalena Bossowska-Nowicka (4102786)
Matthias Schweizer (259498)

January 2019

KEGG pathways generated for poly(I:C)vs Con, CpG DNA vs Con, and poly(I:C) vs CpG DNA (XLSX 98 kb

Additional file 6: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix Toka (6187826)
Kiera Dunaway (3121509)
Felicia Smaltz (6187832)
Lidia Szulc-DÄbrowska (6187865)
Jenny Drnevich (170966)
Matylda Mielcarska (6187838)
Magdalena Bossowska-Nowicka (4102786)
Matthias Schweizer (259498)

January 2019

(A) Top Network generated from the poly(I:C)vs CpG DNA comparison. Antimicrobial response, Inflammat...

Additional file 7: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix Toka (6187826)
Kiera Dunaway (3121509)
Felicia Smaltz (6187832)
Lidia Szulc-DÄbrowska (6187865)
Jenny Drnevich (170966)
Matylda Mielcarska (6187838)
Magdalena Bossowska-Nowicka (4102786)
Matthias Schweizer (259498)

January 2019

Tables. (A) Top 5 Canonical pathways generated by Ingenuity Pathway Analysis (IPA) of differentially...

Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix N. Toka
Kiera Dunaway
Felicia Smaltz
Lidia Szulc-Dąbrowska
Jenny Drnevich
Matylda Barbara Mielcarska
Magdalena Bossowska-Nowicka
Matthias Schweizer

January 2019

Abstract Background Pathogens stimulate immune functions of macrophages. Macrophages are a key senti...

Additional file 1: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix Toka (6187826)
Kiera Dunaway (3121509)
Felicia Smaltz (6187832)
Lidia Szulc-Dąbrowska (2636815)
Jenny Drnevich (170966)
Matylda Mielcarska (6187838)
Magdalena Bossowska-Nowicka (4102786)
Matthias Schweizer (259498)

January 2019

Figure S1. PlasmoTest results from Bomac cells. Supernatants were collected from 8 subsequent passag...

Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line.

Toka, Felix N
Dunaway, Kiera
Smaltz, Felicia
Szulc-Dąbrowska, Lidia
Drnevich, Jenny
Mielcarska, Matylda Barbara
Bossowska-Nowicka, Magdalena
Schweizer, Matthias

January 2019

BACKGROUND Pathogens stimulate immune functions of macrophages. Macrophages are a key sentinel ce...

Additional file 6: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

Anna Lewandowska-Sabat (3546806)
Silje Hansen (5045789)
Trygve Solberg (3559769)
Olav Østerås (5085830)
Bjørg Heringstad (5085827)
Preben Boysen (437280)
Ingrid Olsaker (45143)

April 2018

Figure S2. Principal component analysis of mapped sequence reads. Control represents sequences from ...

Additional file 8: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

Anna Lewandowska-Sabat (3546806)
Silje Hansen (5045789)
Trygve Solberg (3559769)
Olav Østerås (5085830)
Bjørg Heringstad (5085827)
Preben Boysen (437280)
Ingrid Olsaker (45143)

April 2018

Table S6. Biological networks associated with top diseases and functions that were overrepresented a...

Additional file 9: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

Anna Lewandowska-Sabat (3546806)
Silje Hansen (5045789)
Trygve Solberg (3559769)
Olav Østerås (5085830)
Bjørg Heringstad (5085827)
Preben Boysen (437280)
Ingrid Olsaker (45143)

April 2018

Table S7. List of target genes of the differentially expressed miRNA as predicted by TargetScan (cum...

Additional file 3: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

Anna Lewandowska-Sabat (3546806)
Silje Hansen (5045789)
Trygve Solberg (3559769)
Olav Østerås (5085830)
Bjørg Heringstad (5085827)
Preben Boysen (437280)
Ingrid Olsaker (45143)

April 2018

Table S2. List of primers used for reverse transcription-quantitative PCR (RT-qPCR). (DOCX 14 kb

Additional file 1: of Activation of innate immune genes in caprine blood leukocytes after systemic endotoxin challenge

Ăyvind Salvesen (3399374)
Malin Reiten (3399326)
Peter Heegaard (3399332)
Michael Tranulis (3399329)
Arild Espenes (279377)
Kerstin Skovgaard (429097)
Cecilie Ersdal (3399335)

October 2016

Gene name, gene abbreviations and primer sequences used in the real time qPCR analysis. For previous...

Additional file 4: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

Anna Lewandowska-Sabat (3546806)
Silje Hansen (5045789)
Trygve Solberg (3559769)
Olav Østerås (5085830)
Bjørg Heringstad (5085827)
Preben Boysen (437280)
Ingrid Olsaker (45143)

April 2018

Table S3. The results of next generation sequencing of 20 libraries from bovine monocyte-derived mac...

Additional file 1: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

Anna Lewandowska-Sabat (3546806)
Silje Hansen (5045789)
Trygve Solberg (3559769)
Olav Østerås (5085830)
Bjørg Heringstad (5085827)
Preben Boysen (437280)
Ingrid Olsaker (45143)

April 2018

Table S1. RNA samples that were used in the study. RIN - RNA integrity number; RT-qPCR - reverse tra...

Additional file 4: of Genome wide transcriptome analysis provides bases on colonic mucosal immune system development affected by colostrum feeding strategies in neonatal calves

Zhixiong He (2833295)
Amanda Fischer (5696384)
Yang Song (88132)
Michael Steele (4391095)
Le Guan (621902)

August 2018

Clustering dendrogram of genes showing module membership in colours. (TIFF 946 kb

Additional file 4: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix Toka (6187826)
Kiera Dunaway (3121509)
Felicia Smaltz (6187832)
Lidia Szulc-DÄbrowska (6187865)
Jenny Drnevich (170966)
Matylda Mielcarska (6187838)
Magdalena Bossowska-Nowicka (4102786)
Matthias Schweizer (259498)

January 2019

GO terms generated for poly(I:C)vs Con, CpG DNA vs Con, and poly(I:C) vs CpG DNA (XLSX 52 kb

Additional file 3: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix Toka (6187826)
Kiera Dunaway (3121509)
Felicia Smaltz (6187832)
Lidia Szulc-DÄbrowska (6187865)
Jenny Drnevich (170966)
Matylda Mielcarska (6187838)
Magdalena Bossowska-Nowicka (4102786)
Matthias Schweizer (259498)

January 2019

KEGG pathways generated for poly(I:C)vs Con, CpG DNA vs Con, and poly(I:C) vs CpG DNA (XLSX 98 kb

Additional file 6: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix Toka (6187826)
Kiera Dunaway (3121509)
Felicia Smaltz (6187832)
Lidia Szulc-DÄbrowska (6187865)
Jenny Drnevich (170966)
Matylda Mielcarska (6187838)
Magdalena Bossowska-Nowicka (4102786)
Matthias Schweizer (259498)

January 2019

(A) Top Network generated from the poly(I:C)vs CpG DNA comparison. Antimicrobial response, Inflammat...

Additional file 7: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix Toka (6187826)
Kiera Dunaway (3121509)
Felicia Smaltz (6187832)
Lidia Szulc-DÄbrowska (6187865)
Jenny Drnevich (170966)
Matylda Mielcarska (6187838)
Magdalena Bossowska-Nowicka (4102786)
Matthias Schweizer (259498)

January 2019

Tables. (A) Top 5 Canonical pathways generated by Ingenuity Pathway Analysis (IPA) of differentially...

Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix N. Toka
Kiera Dunaway
Felicia Smaltz
Lidia Szulc-Dąbrowska
Jenny Drnevich
Matylda Barbara Mielcarska
Magdalena Bossowska-Nowicka
Matthias Schweizer

January 2019

Abstract Background Pathogens stimulate immune functions of macrophages. Macrophages are a key senti...

Additional file 1: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Felix Toka (6187826)
Kiera Dunaway (3121509)
Felicia Smaltz (6187832)
Lidia Szulc-Dąbrowska (2636815)
Jenny Drnevich (170966)
Matylda Mielcarska (6187838)
Magdalena Bossowska-Nowicka (4102786)
Matthias Schweizer (259498)

January 2019

Figure S1. PlasmoTest results from Bomac cells. Supernatants were collected from 8 subsequent passag...

Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line.

Toka, Felix N
Dunaway, Kiera
Smaltz, Felicia
Szulc-Dąbrowska, Lidia
Drnevich, Jenny
Mielcarska, Matylda Barbara
Bossowska-Nowicka, Magdalena
Schweizer, Matthias

January 2019

BACKGROUND Pathogens stimulate immune functions of macrophages. Macrophages are a key sentinel ce...

Additional file 6: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

Anna Lewandowska-Sabat (3546806)
Silje Hansen (5045789)
Trygve Solberg (3559769)
Olav Østerås (5085830)
Bjørg Heringstad (5085827)
Preben Boysen (437280)
Ingrid Olsaker (45143)

April 2018

Figure S2. Principal component analysis of mapped sequence reads. Control represents sequences from ...

Additional file 8: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

Anna Lewandowska-Sabat (3546806)
Silje Hansen (5045789)
Trygve Solberg (3559769)
Olav Østerås (5085830)
Bjørg Heringstad (5085827)
Preben Boysen (437280)
Ingrid Olsaker (45143)

April 2018

Table S6. Biological networks associated with top diseases and functions that were overrepresented a...

Additional file 9: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

Anna Lewandowska-Sabat (3546806)
Silje Hansen (5045789)
Trygve Solberg (3559769)
Olav Østerås (5085830)
Bjørg Heringstad (5085827)
Preben Boysen (437280)
Ingrid Olsaker (45143)

April 2018

Table S7. List of target genes of the differentially expressed miRNA as predicted by TargetScan (cum...

Additional file 3: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

Anna Lewandowska-Sabat (3546806)
Silje Hansen (5045789)
Trygve Solberg (3559769)
Olav Østerås (5085830)
Bjørg Heringstad (5085827)
Preben Boysen (437280)
Ingrid Olsaker (45143)

April 2018

Table S2. List of primers used for reverse transcription-quantitative PCR (RT-qPCR). (DOCX 14 kb

Additional file 1: of Activation of innate immune genes in caprine blood leukocytes after systemic endotoxin challenge

Ăyvind Salvesen (3399374)
Malin Reiten (3399326)
Peter Heegaard (3399332)
Michael Tranulis (3399329)
Arild Espenes (279377)
Kerstin Skovgaard (429097)
Cecilie Ersdal (3399335)

October 2016

Gene name, gene abbreviations and primer sequences used in the real time qPCR analysis. For previous...

Additional file 4: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

Anna Lewandowska-Sabat (3546806)
Silje Hansen (5045789)
Trygve Solberg (3559769)
Olav Østerås (5085830)
Bjørg Heringstad (5085827)
Preben Boysen (437280)
Ingrid Olsaker (45143)

April 2018

Table S3. The results of next generation sequencing of 20 libraries from bovine monocyte-derived mac...

Additional file 1: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

Anna Lewandowska-Sabat (3546806)
Silje Hansen (5045789)
Trygve Solberg (3559769)
Olav Østerås (5085830)
Bjørg Heringstad (5085827)
Preben Boysen (437280)
Ingrid Olsaker (45143)

April 2018

Table S1. RNA samples that were used in the study. RIN - RNA integrity number; RT-qPCR - reverse tra...

Additional file 4: of Genome wide transcriptome analysis provides bases on colonic mucosal immune system development affected by colostrum feeding strategies in neonatal calves

Zhixiong He (2833295)
Amanda Fischer (5696384)
Yang Song (88132)
Michael Steele (4391095)
Le Guan (621902)

August 2018

Clustering dendrogram of genes showing module membership in colours. (TIFF 946 kb

Additional file 5: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Abstract

Extracted data

Additional file 5: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

Abstract

Extracted data

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