Additional file 4 of Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects

Additional file 1: of Large-scale analysis reveals that the genome features of simple sequence repeats are generally conserved at the family level in insects

Simin Ding (4575376)
Shuping Wang (466892)
Kang He (189002)
Mingxing Jiang (4575379)
Fei Li (143236)

November 2017

Table S1. The genome sizes, GC content, SSR numbers and densities of 136 insect genomes. (DOCX 40 kb

Additional file 1: of Drosophila parasitoid wasps bears a distinct DNA transposon profile

Alexandre da Silva (3452174)
Filipe Dezordi (5490302)
Elgion Loreto (631501)
Gabriel Wallau (4355176)

July 2018

Workflow of softwares used in this study. A) pipelines and softwares used to complementary character...

Phylogenomics Resolves The Timing And Pattern Of Insect Evolution: Supplementary File Archives.

Misof, Bernhard
Liu, Shanlin
Meusemann, Karen
Peters, Ralph S.
Donath, Alexander
Mayer, Christoph
Frandsen, Paul B.
Ware, Jessica
Flouri, Tomas
Beutel, Rolf G.
Niehuis, Oliver
Petersen, Malte
Izquierdo-Carrasco, Fernando
Wappler, Torsten
Rust, Jes
Aberer, Andre J.
Aspöck, Ulrike
Aspöck, Horst
Bartel, Daniela
Blanke, Alexander
Berger, Simon
Böhm, Alexander
Buckley, Thomas
Calcott, Brett
Chen, Junqing
Friedrich, Frank
Fukui, Makiko
Fujita, Mari
Greve, Carola
Grobe, Peter
Gu, Shengchang
Huang, Ying
Jermiin, Lars S.
Kawahara, Akito Y.
Krogmann, Lars
Kubiak, Martin
Lanfear, Robert
Letsch, Harald
Li, Yiyuan
Li, Zhenyu
Li, Jiguang
Lu, Haorong
Machida, Ryuichiro
Mashimo, Yuta
Kapli, Pashalia
McKenna, Duane D.
Meng, Guanliang
Nakagaki, Yasutaka
Navarrete-Heredia, José Luis
Ott, Michael
Ou, Yanxiang
Pass, Günther
Podsiadlowski, Lars
Pohl, Hans
von Reumont, Björn M
Schütte, Kai
Sekiya, Kaoru
Shimizu, Shota
Slipinski, Adam
Stamatakis, Alexandros
Song, Wenhui
Su, Xu
Szucsich, Nikolaus U.
Tan, Meihua
Tan, Xuemei
Tang, Min
Tang, Jingbo
Timelthaler, Gerald
Tomizuka, Shigekazu
Trautwein, Michelle
Tong, Xiaoli
Uchifune, Toshiki
Walzl, Manfred G.
Wiegmann, Brian M.
Wilbrandt, Jeanne
Wipfler, Benjamin
Wong, Thomas KF
Wu, Qiong
Wu, Gengxiong
Xie, Yinlong
Yang, Shenzhou
Yang, Qing
Yeates, David K.
Yoshizawa, Kazunori
Zhang, Qing
Zhang, Rui
Zhang, Wenwei
Zhang, Yunhui
Zhao, Jing
Zhou, Chengran
Zhou, Lili
Ziesmann, Tanja
Zou, Shijie
Li, Yingrui
Xu, Xun
Zhang, Yong
Yang, Huanming
Wang, Jian
Wang, Jun
Kjer, Karl M.
Zhou, Xin

November 2014

Phylogenomics Resolves The Timing And Pattern Of Insect Evolution: Supplementary File Archives. This...

Additional file 1 of Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects

Malte Petersen (3183417)
David ArmisĂŠn (6001937)
Richard Gibbs (144333)
Lars Hering (110405)
Abderrahman Khila (223266)
Georg Mayer (77476)
Stephen Richards (1495)
Oliver Niehuis (153801)
Bernhard Misof (153798)

January 2019

Statistics on the TE content of arthropod genomes. This tab-separated table lists the genome assembl...

Additional file 2 of Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects

Malte Petersen (3183417)
David ArmisĂŠn (6001937)
Richard Gibbs (144333)
Lars Hering (110405)
Abderrahman Khila (223266)
Georg Mayer (77476)
Stephen Richards (1495)
Oliver Niehuis (153801)
Bernhard Misof (153798)

January 2019

This plot shows that the number of TE superfamilies is correlated to the genome assembly size. (PDF ...

Additional file 3 of Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects

Malte Petersen (3183417)
David ArmisĂŠn (6001937)
Richard Gibbs (144333)
Lars Hering (110405)
Abderrahman Khila (223266)
Georg Mayer (77476)
Stephen Richards (1495)
Oliver Niehuis (153801)
Bernhard Misof (153798)

January 2019

Alu alignments. These plots illustrate that copies of the SINE Alu are present in 56 of the genomes ...

Data from: Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects

Petersen, Malte
Armisén, David
Gibbs, Richard
Hering, Lars
Khila, Abderrahman
Mayer, Georg
Richards, Stephen
Niehuis, Oliver
Misof, Bernhard

January 2019

Background: Transposable elements (TEs) are a major component of metazoan genomes and are associated...

Data from: Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects

Petersen, Malte
Armisén, David
Gibbs, Richard
Hering, Lars
Khila, Abderrahman
Mayer, Georg
Richards, Stephen
Niehuis, Oliver
Misof, Bernhard

January 2019

Background: Transposable elements (TEs) are a major component of metazoan genomes and are associated...

Data from: Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects

Petersen, Malte
Armisén, David
Gibbs, Richard
Hering, Lars
Khila, Abderrahman
Mayer, Georg
Richards, Stephen
Niehuis, Oliver
Misof, Bernhard

Background: Transposable elements (TEs) are a major component of metazoan genomes and are associated...

Additional file 2: of Evolution of Mutator transposable elements across eukaryotic diversity

Mathilde Dupeyron (6497000)
Kumar Singh (6497003)
Chris Bass (77286)
Alexander Hayward (215804)

March 2019

Table S2. Genomic features and characteristics of each Ghost, Spectre and new aphid Phantom elements...

Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects

Malte Petersen
David Armisén
Richard A. Gibbs
Lars Hering
Abderrahman Khila
Georg Mayer
Stephen Richards
Oliver Niehuis
Bernhard Misof

January 2019

Abstract Background Transposable elements (TEs) are a major component of metazoan genomes and are as...

Additional file 1: of Evolution of Mutator transposable elements across eukaryotic diversity

Mathilde Dupeyron (6497000)
Kumar Singh (6497003)
Chris Bass (77286)
Alexander Hayward (215804)

March 2019

Phylogenetic tree of the amino-acid DDE transposase domain of 1631 autonomous Mutator-like elements....

Diversification of Transposable Elements in Arthropods and Its Impact on Genome Evolution

Changcheng Wu
Jian Lu

May 2019

Transposable elements (TEs) are ubiquitous in arthropods. However, analyses of large-scale and long-...

Additional file 5: of Evolution of Mutator transposable elements across eukaryotic diversity

Mathilde Dupeyron (6497000)
Kumar Singh (6497003)
Chris Bass (77286)
Alexander Hayward (215804)

March 2019

A graph of the number of assigned clusters according to the thresholds applied in each ClusterPicker...

Additional file 12: of Large-scale analysis reveals that the genome features of simple sequence repeats are generally conserved at the family level in insects

Simin Ding (4575376)
Shuping Wang (466892)
Kang He (189002)
Mingxing Jiang (4575379)
Fei Li (143236)

November 2017

Figure S4. Phylogenetic analysis of 136 insect genomes using the relative abundance information from...

Additional file 1: of Large-scale analysis reveals that the genome features of simple sequence repeats are generally conserved at the family level in insects

Simin Ding (4575376)
Shuping Wang (466892)
Kang He (189002)
Mingxing Jiang (4575379)
Fei Li (143236)

November 2017

Table S1. The genome sizes, GC content, SSR numbers and densities of 136 insect genomes. (DOCX 40 kb

Additional file 1: of Drosophila parasitoid wasps bears a distinct DNA transposon profile

Alexandre da Silva (3452174)
Filipe Dezordi (5490302)
Elgion Loreto (631501)
Gabriel Wallau (4355176)

July 2018

Workflow of softwares used in this study. A) pipelines and softwares used to complementary character...

Phylogenomics Resolves The Timing And Pattern Of Insect Evolution: Supplementary File Archives.

Misof, Bernhard
Liu, Shanlin
Meusemann, Karen
Peters, Ralph S.
Donath, Alexander
Mayer, Christoph
Frandsen, Paul B.
Ware, Jessica
Flouri, Tomas
Beutel, Rolf G.
Niehuis, Oliver
Petersen, Malte
Izquierdo-Carrasco, Fernando
Wappler, Torsten
Rust, Jes
Aberer, Andre J.
Aspöck, Ulrike
Aspöck, Horst
Bartel, Daniela
Blanke, Alexander
Berger, Simon
Böhm, Alexander
Buckley, Thomas
Calcott, Brett
Chen, Junqing
Friedrich, Frank
Fukui, Makiko
Fujita, Mari
Greve, Carola
Grobe, Peter
Gu, Shengchang
Huang, Ying
Jermiin, Lars S.
Kawahara, Akito Y.
Krogmann, Lars
Kubiak, Martin
Lanfear, Robert
Letsch, Harald
Li, Yiyuan
Li, Zhenyu
Li, Jiguang
Lu, Haorong
Machida, Ryuichiro
Mashimo, Yuta
Kapli, Pashalia
McKenna, Duane D.
Meng, Guanliang
Nakagaki, Yasutaka
Navarrete-Heredia, José Luis
Ott, Michael
Ou, Yanxiang
Pass, Günther
Podsiadlowski, Lars
Pohl, Hans
von Reumont, Björn M
Schütte, Kai
Sekiya, Kaoru
Shimizu, Shota
Slipinski, Adam
Stamatakis, Alexandros
Song, Wenhui
Su, Xu
Szucsich, Nikolaus U.
Tan, Meihua
Tan, Xuemei
Tang, Min
Tang, Jingbo
Timelthaler, Gerald
Tomizuka, Shigekazu
Trautwein, Michelle
Tong, Xiaoli
Uchifune, Toshiki
Walzl, Manfred G.
Wiegmann, Brian M.
Wilbrandt, Jeanne
Wipfler, Benjamin
Wong, Thomas KF
Wu, Qiong
Wu, Gengxiong
Xie, Yinlong
Yang, Shenzhou
Yang, Qing
Yeates, David K.
Yoshizawa, Kazunori
Zhang, Qing
Zhang, Rui
Zhang, Wenwei
Zhang, Yunhui
Zhao, Jing
Zhou, Chengran
Zhou, Lili
Ziesmann, Tanja
Zou, Shijie
Li, Yingrui
Xu, Xun
Zhang, Yong
Yang, Huanming
Wang, Jian
Wang, Jun
Kjer, Karl M.
Zhou, Xin

November 2014

Phylogenomics Resolves The Timing And Pattern Of Insect Evolution: Supplementary File Archives. This...

Additional file 1 of Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects

Malte Petersen (3183417)
David ArmisĂŠn (6001937)
Richard Gibbs (144333)
Lars Hering (110405)
Abderrahman Khila (223266)
Georg Mayer (77476)
Stephen Richards (1495)
Oliver Niehuis (153801)
Bernhard Misof (153798)

January 2019

Statistics on the TE content of arthropod genomes. This tab-separated table lists the genome assembl...

Additional file 2 of Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects

Malte Petersen (3183417)
David ArmisĂŠn (6001937)
Richard Gibbs (144333)
Lars Hering (110405)
Abderrahman Khila (223266)
Georg Mayer (77476)
Stephen Richards (1495)
Oliver Niehuis (153801)
Bernhard Misof (153798)

January 2019

This plot shows that the number of TE superfamilies is correlated to the genome assembly size. (PDF ...

Additional file 3 of Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects

Malte Petersen (3183417)
David ArmisĂŠn (6001937)
Richard Gibbs (144333)
Lars Hering (110405)
Abderrahman Khila (223266)
Georg Mayer (77476)
Stephen Richards (1495)
Oliver Niehuis (153801)
Bernhard Misof (153798)

January 2019

Alu alignments. These plots illustrate that copies of the SINE Alu are present in 56 of the genomes ...

Data from: Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects

Petersen, Malte
Armisén, David
Gibbs, Richard
Hering, Lars
Khila, Abderrahman
Mayer, Georg
Richards, Stephen
Niehuis, Oliver
Misof, Bernhard

January 2019

Background: Transposable elements (TEs) are a major component of metazoan genomes and are associated...

Data from: Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects

Petersen, Malte
Armisén, David
Gibbs, Richard
Hering, Lars
Khila, Abderrahman
Mayer, Georg
Richards, Stephen
Niehuis, Oliver
Misof, Bernhard

January 2019

Background: Transposable elements (TEs) are a major component of metazoan genomes and are associated...

Data from: Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects

Petersen, Malte
Armisén, David
Gibbs, Richard
Hering, Lars
Khila, Abderrahman
Mayer, Georg
Richards, Stephen
Niehuis, Oliver
Misof, Bernhard

Background: Transposable elements (TEs) are a major component of metazoan genomes and are associated...

Additional file 2: of Evolution of Mutator transposable elements across eukaryotic diversity

Mathilde Dupeyron (6497000)
Kumar Singh (6497003)
Chris Bass (77286)
Alexander Hayward (215804)

March 2019

Table S2. Genomic features and characteristics of each Ghost, Spectre and new aphid Phantom elements...

Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects

Malte Petersen
David Armisén
Richard A. Gibbs
Lars Hering
Abderrahman Khila
Georg Mayer
Stephen Richards
Oliver Niehuis
Bernhard Misof

January 2019

Abstract Background Transposable elements (TEs) are a major component of metazoan genomes and are as...

Additional file 1: of Evolution of Mutator transposable elements across eukaryotic diversity

Mathilde Dupeyron (6497000)
Kumar Singh (6497003)
Chris Bass (77286)
Alexander Hayward (215804)

March 2019

Phylogenetic tree of the amino-acid DDE transposase domain of 1631 autonomous Mutator-like elements....

Diversification of Transposable Elements in Arthropods and Its Impact on Genome Evolution

Changcheng Wu
Jian Lu

May 2019

Transposable elements (TEs) are ubiquitous in arthropods. However, analyses of large-scale and long-...

Additional file 5: of Evolution of Mutator transposable elements across eukaryotic diversity

Mathilde Dupeyron (6497000)
Kumar Singh (6497003)
Chris Bass (77286)
Alexander Hayward (215804)

March 2019

A graph of the number of assigned clusters according to the thresholds applied in each ClusterPicker...

Additional file 12: of Large-scale analysis reveals that the genome features of simple sequence repeats are generally conserved at the family level in insects

Simin Ding (4575376)
Shuping Wang (466892)
Kang He (189002)
Mingxing Jiang (4575379)
Fei Li (143236)

November 2017

Figure S4. Phylogenetic analysis of 136 insect genomes using the relative abundance information from...

Additional file 1: of Large-scale analysis reveals that the genome features of simple sequence repeats are generally conserved at the family level in insects

Simin Ding (4575376)
Shuping Wang (466892)
Kang He (189002)
Mingxing Jiang (4575379)
Fei Li (143236)

November 2017

Table S1. The genome sizes, GC content, SSR numbers and densities of 136 insect genomes. (DOCX 40 kb

Additional file 1: of Drosophila parasitoid wasps bears a distinct DNA transposon profile

Alexandre da Silva (3452174)
Filipe Dezordi (5490302)
Elgion Loreto (631501)
Gabriel Wallau (4355176)

July 2018

Workflow of softwares used in this study. A) pipelines and softwares used to complementary character...

Phylogenomics Resolves The Timing And Pattern Of Insect Evolution: Supplementary File Archives.

Misof, Bernhard
Liu, Shanlin
Meusemann, Karen
Peters, Ralph S.
Donath, Alexander
Mayer, Christoph
Frandsen, Paul B.
Ware, Jessica
Flouri, Tomas
Beutel, Rolf G.
Niehuis, Oliver
Petersen, Malte
Izquierdo-Carrasco, Fernando
Wappler, Torsten
Rust, Jes
Aberer, Andre J.
Aspöck, Ulrike
Aspöck, Horst
Bartel, Daniela
Blanke, Alexander
Berger, Simon
Böhm, Alexander
Buckley, Thomas
Calcott, Brett
Chen, Junqing
Friedrich, Frank
Fukui, Makiko
Fujita, Mari
Greve, Carola
Grobe, Peter
Gu, Shengchang
Huang, Ying
Jermiin, Lars S.
Kawahara, Akito Y.
Krogmann, Lars
Kubiak, Martin
Lanfear, Robert
Letsch, Harald
Li, Yiyuan
Li, Zhenyu
Li, Jiguang
Lu, Haorong
Machida, Ryuichiro
Mashimo, Yuta
Kapli, Pashalia
McKenna, Duane D.
Meng, Guanliang
Nakagaki, Yasutaka
Navarrete-Heredia, José Luis
Ott, Michael
Ou, Yanxiang
Pass, Günther
Podsiadlowski, Lars
Pohl, Hans
von Reumont, Björn M
Schütte, Kai
Sekiya, Kaoru
Shimizu, Shota
Slipinski, Adam
Stamatakis, Alexandros
Song, Wenhui
Su, Xu
Szucsich, Nikolaus U.
Tan, Meihua
Tan, Xuemei
Tang, Min
Tang, Jingbo
Timelthaler, Gerald
Tomizuka, Shigekazu
Trautwein, Michelle
Tong, Xiaoli
Uchifune, Toshiki
Walzl, Manfred G.
Wiegmann, Brian M.
Wilbrandt, Jeanne
Wipfler, Benjamin
Wong, Thomas KF
Wu, Qiong
Wu, Gengxiong
Xie, Yinlong
Yang, Shenzhou
Yang, Qing
Yeates, David K.
Yoshizawa, Kazunori
Zhang, Qing
Zhang, Rui
Zhang, Wenwei
Zhang, Yunhui
Zhao, Jing
Zhou, Chengran
Zhou, Lili
Ziesmann, Tanja
Zou, Shijie
Li, Yingrui
Xu, Xun
Zhang, Yong
Yang, Huanming
Wang, Jian
Wang, Jun
Kjer, Karl M.
Zhou, Xin

November 2014

Phylogenomics Resolves The Timing And Pattern Of Insect Evolution: Supplementary File Archives. This...

Additional file 4 of Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects

Abstract

Extracted data

Additional file 4 of Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects

Abstract

Extracted data

Related items

Related items