Additional file 4: of Germline TP53 and MSH6 mutations implicated in sporadic triple-negative breast cancer (TNBC): a preliminary study

Additional file 5: of Targeted next-generation sequencing identifies clinically relevant somatic mutations in a large cohort of inflammatory breast cancer

Xu Liang (433535)
Sophie Vacher (233965)
Anais Boulai (5612039)
Virginie Bernard (2226220)
Sylvain Baulande (5113562)
Mylene Bohec (5612042)
Ivan BiĂ¨che (5506235)
Florence Lerebours (303656)
CĂŠline Callens (5612045)

August 2018

Figure S3. DNA copy number alterations in the IBC cohort. The genes with DNA copy number alterations...

Additional file 1: of A comprehensive survey of the mutagenic impact of common cancer cytotoxics

Bernadett Szikriszt (3426851)
Ádám Póti (3426842)
Orsolya Pipek (3426839)
Marcin Krzystanek (402795)
Nnennaya Kanu (3426848)
János Molnár (438764)
Dezső Ribli (2811223)
Zoltán Szeltner (3426854)
Gábor Tusnády (3426845)
István Csabai (130985)
Zoltan Szallasi (58337)
Charles Swanton (236153)
Dávid Szüts (109906)

May 2016

Supplementary Tables. Table S1 lists the number of SNV and indel mutations found in each individual ...

Additional file 4: of Targeted next-generation sequencing identifies clinically relevant somatic mutations in a large cohort of inflammatory breast cancer

Xu Liang (433535)
Sophie Vacher (233965)
Anais Boulai (5612039)
Virginie Bernard (2226220)
Sylvain Baulande (5113562)
Mylene Bohec (5612042)
Ivan Bièche (3492)
Florence Lerebours (303656)
Céline Callens (424227)

August 2018

Figure S2. Comparison of biological pathway between IBC and non-IBC in four subgroups. (a) The perce...

Additional file 3: of Germline TP53 and MSH6 mutations implicated in sporadic triple-negative breast cancer (TNBC): a preliminary study

Dandan Yi (6197657)
Lei Xu (78676)
Jiaqi Luo (4580191)
Xiaobin You (6197660)
Tao Huang (110613)
Yi Zi (6197663)
Xiaoting Li (348766)
Ru Wang (282586)
Zaixuan Zhong (4431553)
Xiaoqiao Tang (2158969)
Ang Li (110963)
Yujian Shi (108950)
Jianmei Rao (6197666)
Yifen Zhang (3949688)
Jianfeng Sang (6197669)

January 2019

Table S3. Driver gene analysis by MutSig. The two genes with q value <â10â3 (TP53 and FANCC, hig...

Additional file 2: of Germline TP53 and MSH6 mutations implicated in sporadic triple-negative breast cancer (TNBC): a preliminary study

Dandan Yi (6197657)
Lei Xu (78676)
Jiaqi Luo (4580191)
Xiaobin You (6197660)
Tao Huang (110613)
Yi Zi (6197663)
Xiaoting Li (348766)
Ru Wang (282586)
Zaixuan Zhong (4431553)
Xiaoqiao Tang (2158969)
Ang Li (110963)
Yujian Shi (108950)
Jianmei Rao (6197666)
Yifen Zhang (3949688)
Jianfeng Sang (6197669)

January 2019

Table S2. Pathogenic and likely pathogenic mutations identified in the studied cohort. Annotations a...

Additional file 3: of Germline breast cancer susceptibility gene mutations and breast cancer outcomes

Yong Wang (12837)
Jhih-Wei Jian (149485)
Chen-Fang Hung (3339318)
Hung-Pin Peng (123676)
Chi-Fan Yang (252960)
Hung-Chun Cheng (4996370)
An-Suei Yang (123675)

March 2018

Table S3. Correlation between clinical risk factors of hereditary breast cancer and having pathogeni...

Additional file 4: Table S3. of Next generation sequencing of triple negative breast cancer to find predictors for chemotherapy response

Esther Lips (3581426)
Magali Michaut (76734)
Marlous Hoogstraat (630624)
Lennart Mulder (3581420)
Nicolle Besselink (630626)
Marco Koudijs (3581423)
Edwin Cuppen (9902)
Emile Voest (3581435)
Rene Bernards (3581432)
Petra Nederlof (3581429)
Jelle Wesseling (248405)
Sjoerd Rodenhuis (523940)
Lodewyk Wessels (66823)

October 2015

List of all mutations. This file shows all mutations passing thresholds as explained in “Methods”. T...

Additional file 2: Table S1. of High prevalence and predominance of BRCA1 germline mutations in Pakistani triple-negative breast cancer patients

Muhammad Rashid (2836631)
Noor Muhammad (820180)
Seerat Bajwa (3428105)
Saima Faisal (3428111)
Muhammad Tahseen (3428102)
Justo Bermejo (3428108)
Asim Amin (3428114)
Asif Loya (651095)
Ute Hamann (89879)

August 2016

Deleterious BRCA1/2 germline mutations in Pakistani patients with TNBC. (DOCX 24Â kb

Additional file 3: of Targeted next-generation sequencing identifies clinically relevant somatic mutations in a large cohort of inflammatory breast cancer

Xu Liang (433535)
Sophie Vacher (233965)
Anais Boulai (5612039)
Virginie Bernard (2226220)
Sylvain Baulande (5113562)
Mylene Bohec (5612042)
Ivan Bièche (3492)
Florence Lerebours (303656)
Céline Callens (424227)

August 2018

Figure S1. Comparison of somatic mutation frequency between IBC and non-IBC in four subgroups. (a) T...

Additional file 3: Table S2. of Increased genomic burden of germline copy number variants is associated with early onset breast cancer: Australian breast cancer family registry

Logan Walker (3844042)
John Pearson (629146)
George Wiggins (3844039)
Graham Giles (521929)
John Hopper (218871)
Melissa Southey (81752)

March 2017

Taqman assays used for CNV assessment at 7 gene loci. Table S3. Cancer-predisposing genes disrupted ...

Additional file 6: of Targeted mutation detection in breast cancer using MammaSeqâ˘

Nicholas Smith (3160875)
Rekha Gyanchandani (6318113)
Osama Shah (6318116)
Grzegorz Gurda (5712482)
Peter Lucas (5126306)
Ryan Hartmaier (109111)
Adam Brufsky (4431337)
Shannon Puhalla (3582689)
Amir Bahreini (3485828)
Karthik Kota (158445)
Abigail Wald (3556292)
Yuri Nikiforov (6318119)
Marina Nikiforova (6318122)
Steffi Oesterreich (109122)
Adrian Lee (3161067)

February 2019

Figure S2. Mean sequencing read depth for (A.) the 46 solid tumor cohort. (B.) isolated mononuclear ...

Additional file 1: Figure S1. of Next generation sequencing of triple negative breast cancer to find predictors for chemotherapy response

Esther Lips (3581426)
Magali Michaut (76734)
Marlous Hoogstraat (630624)
Lennart Mulder (3581420)
Nicolle Besselink (630626)
Marco Koudijs (3581423)
Edwin Cuppen (9902)
Emile Voest (3581435)
Rene Bernards (3581432)
Petra Nederlof (3581429)
Jelle Wesseling (248405)
Sjoerd Rodenhuis (523940)
Lodewyk Wessels (66823)

October 2015

BRCA1 gene expression, measured by RT-PCR, for BRCA1-methylated, mutated and non-mutated/non-methyla...

Additional file 6: of Targeted next-generation sequencing identifies clinically relevant somatic mutations in a large cohort of inflammatory breast cancer

Xu Liang (433535)
Sophie Vacher (233965)
Anais Boulai (5612039)
Virginie Bernard (2226220)
Sylvain Baulande (5113562)
Mylene Bohec (5612042)
Ivan BiĂ¨che (5506235)
Florence Lerebours (303656)
CĂŠline Callens (5612045)

August 2018

Figure S4. MFS curves stratified by PIK3CA mutation in three subgroups of IBC patients. (a) Kaplan-M...

Additional file 3: Figure S2. of Association of a novel point mutation in MSH2 gene with familial multiple primary cancers

Hai Hu (141546)
Hong Li (20183)
Feng Jiao (390944)
Ting Han (170267)
Meng Zhuo (4489786)
Jiujie Cui (4489789)
Yixue Li (18673)
Liwei Wang (165815)

October 2017

Clinical description of cancer patients. Table S2 Statistics of whole-genome sequencing results. Tab...

Additional file 7: Table S6. of Next generation sequencing of triple negative breast cancer to find predictors for chemotherapy response

Esther Lips (3581426)
Magali Michaut (76734)
Marlous Hoogstraat (630624)
Lennart Mulder (3581420)
Nicolle Besselink (630626)
Marco Koudijs (3581423)
Edwin Cuppen (9902)
Emile Voest (3581435)
Rene Bernards (3581432)
Petra Nederlof (3581429)
Jelle Wesseling (248405)
Sjoerd Rodenhuis (523940)
Lodewyk Wessels (66823)

October 2015

Specific mutations within affected pathways. This file shows all pathways with KEGG IDs, and mutatio...

Additional file 5: of Targeted next-generation sequencing identifies clinically relevant somatic mutations in a large cohort of inflammatory breast cancer

Xu Liang (433535)
Sophie Vacher (233965)
Anais Boulai (5612039)
Virginie Bernard (2226220)
Sylvain Baulande (5113562)
Mylene Bohec (5612042)
Ivan BiĂ¨che (5506235)
Florence Lerebours (303656)
CĂŠline Callens (5612045)

August 2018

Figure S3. DNA copy number alterations in the IBC cohort. The genes with DNA copy number alterations...

Additional file 1: of A comprehensive survey of the mutagenic impact of common cancer cytotoxics

Bernadett Szikriszt (3426851)
Ádám Póti (3426842)
Orsolya Pipek (3426839)
Marcin Krzystanek (402795)
Nnennaya Kanu (3426848)
János Molnár (438764)
Dezső Ribli (2811223)
Zoltán Szeltner (3426854)
Gábor Tusnády (3426845)
István Csabai (130985)
Zoltan Szallasi (58337)
Charles Swanton (236153)
Dávid Szüts (109906)

May 2016

Supplementary Tables. Table S1 lists the number of SNV and indel mutations found in each individual ...

Additional file 4: of Targeted next-generation sequencing identifies clinically relevant somatic mutations in a large cohort of inflammatory breast cancer

Xu Liang (433535)
Sophie Vacher (233965)
Anais Boulai (5612039)
Virginie Bernard (2226220)
Sylvain Baulande (5113562)
Mylene Bohec (5612042)
Ivan Bièche (3492)
Florence Lerebours (303656)
Céline Callens (424227)

August 2018

Figure S2. Comparison of biological pathway between IBC and non-IBC in four subgroups. (a) The perce...

Additional file 3: of Germline TP53 and MSH6 mutations implicated in sporadic triple-negative breast cancer (TNBC): a preliminary study

Dandan Yi (6197657)
Lei Xu (78676)
Jiaqi Luo (4580191)
Xiaobin You (6197660)
Tao Huang (110613)
Yi Zi (6197663)
Xiaoting Li (348766)
Ru Wang (282586)
Zaixuan Zhong (4431553)
Xiaoqiao Tang (2158969)
Ang Li (110963)
Yujian Shi (108950)
Jianmei Rao (6197666)
Yifen Zhang (3949688)
Jianfeng Sang (6197669)

January 2019

Table S3. Driver gene analysis by MutSig. The two genes with q value <â10â3 (TP53 and FANCC, hig...

Additional file 2: of Germline TP53 and MSH6 mutations implicated in sporadic triple-negative breast cancer (TNBC): a preliminary study

Dandan Yi (6197657)
Lei Xu (78676)
Jiaqi Luo (4580191)
Xiaobin You (6197660)
Tao Huang (110613)
Yi Zi (6197663)
Xiaoting Li (348766)
Ru Wang (282586)
Zaixuan Zhong (4431553)
Xiaoqiao Tang (2158969)
Ang Li (110963)
Yujian Shi (108950)
Jianmei Rao (6197666)
Yifen Zhang (3949688)
Jianfeng Sang (6197669)

January 2019

Table S2. Pathogenic and likely pathogenic mutations identified in the studied cohort. Annotations a...

Additional file 3: of Germline breast cancer susceptibility gene mutations and breast cancer outcomes

Yong Wang (12837)
Jhih-Wei Jian (149485)
Chen-Fang Hung (3339318)
Hung-Pin Peng (123676)
Chi-Fan Yang (252960)
Hung-Chun Cheng (4996370)
An-Suei Yang (123675)

March 2018

Table S3. Correlation between clinical risk factors of hereditary breast cancer and having pathogeni...

Additional file 4: Table S3. of Next generation sequencing of triple negative breast cancer to find predictors for chemotherapy response

Esther Lips (3581426)
Magali Michaut (76734)
Marlous Hoogstraat (630624)
Lennart Mulder (3581420)
Nicolle Besselink (630626)
Marco Koudijs (3581423)
Edwin Cuppen (9902)
Emile Voest (3581435)
Rene Bernards (3581432)
Petra Nederlof (3581429)
Jelle Wesseling (248405)
Sjoerd Rodenhuis (523940)
Lodewyk Wessels (66823)

October 2015

List of all mutations. This file shows all mutations passing thresholds as explained in “Methods”. T...

Additional file 2: Table S1. of High prevalence and predominance of BRCA1 germline mutations in Pakistani triple-negative breast cancer patients

Muhammad Rashid (2836631)
Noor Muhammad (820180)
Seerat Bajwa (3428105)
Saima Faisal (3428111)
Muhammad Tahseen (3428102)
Justo Bermejo (3428108)
Asim Amin (3428114)
Asif Loya (651095)
Ute Hamann (89879)

August 2016

Deleterious BRCA1/2 germline mutations in Pakistani patients with TNBC. (DOCX 24Â kb

Additional file 3: of Targeted next-generation sequencing identifies clinically relevant somatic mutations in a large cohort of inflammatory breast cancer

Xu Liang (433535)
Sophie Vacher (233965)
Anais Boulai (5612039)
Virginie Bernard (2226220)
Sylvain Baulande (5113562)
Mylene Bohec (5612042)
Ivan Bièche (3492)
Florence Lerebours (303656)
Céline Callens (424227)

August 2018

Figure S1. Comparison of somatic mutation frequency between IBC and non-IBC in four subgroups. (a) T...

Additional file 3: Table S2. of Increased genomic burden of germline copy number variants is associated with early onset breast cancer: Australian breast cancer family registry

Logan Walker (3844042)
John Pearson (629146)
George Wiggins (3844039)
Graham Giles (521929)
John Hopper (218871)
Melissa Southey (81752)

March 2017

Taqman assays used for CNV assessment at 7 gene loci. Table S3. Cancer-predisposing genes disrupted ...

Additional file 6: of Targeted mutation detection in breast cancer using MammaSeqâ˘

Nicholas Smith (3160875)
Rekha Gyanchandani (6318113)
Osama Shah (6318116)
Grzegorz Gurda (5712482)
Peter Lucas (5126306)
Ryan Hartmaier (109111)
Adam Brufsky (4431337)
Shannon Puhalla (3582689)
Amir Bahreini (3485828)
Karthik Kota (158445)
Abigail Wald (3556292)
Yuri Nikiforov (6318119)
Marina Nikiforova (6318122)
Steffi Oesterreich (109122)
Adrian Lee (3161067)

February 2019

Figure S2. Mean sequencing read depth for (A.) the 46 solid tumor cohort. (B.) isolated mononuclear ...

Additional file 1: Figure S1. of Next generation sequencing of triple negative breast cancer to find predictors for chemotherapy response

Esther Lips (3581426)
Magali Michaut (76734)
Marlous Hoogstraat (630624)
Lennart Mulder (3581420)
Nicolle Besselink (630626)
Marco Koudijs (3581423)
Edwin Cuppen (9902)
Emile Voest (3581435)
Rene Bernards (3581432)
Petra Nederlof (3581429)
Jelle Wesseling (248405)
Sjoerd Rodenhuis (523940)
Lodewyk Wessels (66823)

October 2015

BRCA1 gene expression, measured by RT-PCR, for BRCA1-methylated, mutated and non-mutated/non-methyla...

Additional file 6: of Targeted next-generation sequencing identifies clinically relevant somatic mutations in a large cohort of inflammatory breast cancer

Xu Liang (433535)
Sophie Vacher (233965)
Anais Boulai (5612039)
Virginie Bernard (2226220)
Sylvain Baulande (5113562)
Mylene Bohec (5612042)
Ivan BiĂ¨che (5506235)
Florence Lerebours (303656)
CĂŠline Callens (5612045)

August 2018

Figure S4. MFS curves stratified by PIK3CA mutation in three subgroups of IBC patients. (a) Kaplan-M...

Additional file 3: Figure S2. of Association of a novel point mutation in MSH2 gene with familial multiple primary cancers

Hai Hu (141546)
Hong Li (20183)
Feng Jiao (390944)
Ting Han (170267)
Meng Zhuo (4489786)
Jiujie Cui (4489789)
Yixue Li (18673)
Liwei Wang (165815)

October 2017

Clinical description of cancer patients. Table S2 Statistics of whole-genome sequencing results. Tab...

Additional file 7: Table S6. of Next generation sequencing of triple negative breast cancer to find predictors for chemotherapy response

Esther Lips (3581426)
Magali Michaut (76734)
Marlous Hoogstraat (630624)
Lennart Mulder (3581420)
Nicolle Besselink (630626)
Marco Koudijs (3581423)
Edwin Cuppen (9902)
Emile Voest (3581435)
Rene Bernards (3581432)
Petra Nederlof (3581429)
Jelle Wesseling (248405)
Sjoerd Rodenhuis (523940)
Lodewyk Wessels (66823)

October 2015

Specific mutations within affected pathways. This file shows all pathways with KEGG IDs, and mutatio...

Additional file 5: of Targeted next-generation sequencing identifies clinically relevant somatic mutations in a large cohort of inflammatory breast cancer

Xu Liang (433535)
Sophie Vacher (233965)
Anais Boulai (5612039)
Virginie Bernard (2226220)
Sylvain Baulande (5113562)
Mylene Bohec (5612042)
Ivan BiĂ¨che (5506235)
Florence Lerebours (303656)
CĂŠline Callens (5612045)

August 2018

Figure S3. DNA copy number alterations in the IBC cohort. The genes with DNA copy number alterations...

Additional file 1: of A comprehensive survey of the mutagenic impact of common cancer cytotoxics

Bernadett Szikriszt (3426851)
Ádám Póti (3426842)
Orsolya Pipek (3426839)
Marcin Krzystanek (402795)
Nnennaya Kanu (3426848)
János Molnár (438764)
Dezső Ribli (2811223)
Zoltán Szeltner (3426854)
Gábor Tusnády (3426845)
István Csabai (130985)
Zoltan Szallasi (58337)
Charles Swanton (236153)
Dávid Szüts (109906)

May 2016

Supplementary Tables. Table S1 lists the number of SNV and indel mutations found in each individual ...

Additional file 4: of Targeted next-generation sequencing identifies clinically relevant somatic mutations in a large cohort of inflammatory breast cancer

Xu Liang (433535)
Sophie Vacher (233965)
Anais Boulai (5612039)
Virginie Bernard (2226220)
Sylvain Baulande (5113562)
Mylene Bohec (5612042)
Ivan Bièche (3492)
Florence Lerebours (303656)
Céline Callens (424227)

August 2018

Figure S2. Comparison of biological pathway between IBC and non-IBC in four subgroups. (a) The perce...

Additional file 4: of Germline TP53 and MSH6 mutations implicated in sporadic triple-negative breast cancer (TNBC): a preliminary study

Abstract

Extracted data

Additional file 4: of Germline TP53 and MSH6 mutations implicated in sporadic triple-negative breast cancer (TNBC): a preliminary study

Abstract

Extracted data

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