Additional file 4: of Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates

Additional file 1: Tables S1-S5. of Population genomics reveals additive and replacing horizontal gene transfers in the emerging pathogen Dickeya solani

Slimane Khayi (3291216)
Pauline Blin (641878)
Jacques Pédron (352958)
Teik-Min Chong (3291213)
Kok-Gan Chan (531824)
Mohieddine Moumni (3291210)
Valérie Hélias (169758)
Frédérique Van Gijsegem (3291219)
Denis Faure (169803)

October 2015

Table S1. Dickeya solani strains in this study. Table S2. Sequencing data and mappings on the Dsl 33...

Additional file 5: of Dickeya zeae strains isolated from rice, banana and clivia rot plants show great virulence differentials

Ming Hu (38573)
Jieling Li (1722136)
Ruiting Chen (5872040)
Wenjun Li (41954)
Luwen Feng (5872046)
Lei Shi (8144)
Yang Xue (166928)
Xiaoyin Feng (5872052)
Lianhui Zhang (548620)
Jianuan Zhou (679516)

October 2018

Primers used in this study for detection of zeamines biosynthesis genes. (DOC 54 kb

Draft Genome Sequences of 17 Isolates of the Plant Pathogenic Bacterium Dickeya

October 2016

Dickeya (formerly Erwinia chrysanthemi) species cause diseases on a wide range of crops and ornament...

Additional file 3: of Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates

Špela Alič (6200537)
Jacques Pédron (352958)
Tanja Dreo (65657)
Frédérique Gijsegem (6200540)

January 2019

Tables S2 and S3. Genes found in each of the JS5 and Nd14b genomic clades that are absent from the o...

Additional file 2: of Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates

Špela Alič (6200537)
Jacques Pédron (352958)
Tanja Dreo (65657)
Frédérique Gijsegem (6200540)

January 2019

Table S1. T5SS and T6SS effectors present in the different Dickeya fangzhongdai genomes. (DOCX 25 kb

Additional file 8: of Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai

Jingxin Zhang (737647)
John Hu (5944565)
Huifang Shen (1657891)
Yucheng Zhang (136327)
Dayuan Sun (3339438)
Xiaoming Pu (5944568)
Qiyun Yang (503880)
Qiurong Fan (5944571)
Birun Lin (381052)

November 2018

Genomic organization of vir clusters of the T4SS in Dickeya strains. The vir cluster of the T4SS in ...

Additional file 9: of Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai

Jingxin Zhang (737647)
John Hu (5944565)
Huifang Shen (1657891)
Yucheng Zhang (136327)
Dayuan Sun (3339438)
Xiaoming Pu (5944568)
Qiyun Yang (503880)
Qiurong Fan (5944571)
Birun Lin (381052)

November 2018

Synteny analysis of Dickeya strains based on sequences of the flagellar-type T3SS. Strains analyzed ...

Additional file 6: of Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai

Jingxin Zhang (737647)
John Hu (5944565)
Huifang Shen (1657891)
Yucheng Zhang (136327)
Dayuan Sun (3339438)
Xiaoming Pu (5944568)
Qiyun Yang (503880)
Qiurong Fan (5944571)
Birun Lin (381052)

November 2018

Genomic organization of hrp-type T3SS in Dickeya strains. The hrp-type T3SS in D. fangzhongdai PA1 i...

Additional file 5: of Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai

Jingxin Zhang (737647)
John Hu (5944565)
Huifang Shen (1657891)
Yucheng Zhang (136327)
Dayuan Sun (3339438)
Xiaoming Pu (5944568)
Qiyun Yang (503880)
Qiurong Fan (5944571)
Birun Lin (381052)

November 2018

Genomic organization of out-type T2SS in Dickeya strains. The out-type T2SS in D. fangzhongdai PA1 i...

Additional file 1: of Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai

Jingxin Zhang (737647)
John Hu (5944565)
Huifang Shen (1657891)
Yucheng Zhang (136327)
Dayuan Sun (3339438)
Xiaoming Pu (5944568)
Qiyun Yang (503880)
Qiurong Fan (5944571)
Birun Lin (381052)

November 2018

Phylogenetic analysis of Dickeya strains based on complete or draft genome sequences. Orthologous gr...

Additional file 10: of Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai

Jingxin Zhang (737647)
John Hu (5944565)
Huifang Shen (1657891)
Yucheng Zhang (136327)
Dayuan Sun (3339438)
Xiaoming Pu (5944568)
Qiyun Yang (503880)
Qiurong Fan (5944571)
Birun Lin (381052)

November 2018

Phylogenetic analysis of D. fangzhongdai, D. dadantii and D. solani strains based on the protein seq...

Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates

Alič, Špela
Pédron, Jacques
Dreo, Tanja
Van Gijsegem, Frédérique

January 2019

BackgroundThe Dickeya genus is part of the Pectobacteriaceae family that is included in the newly de...

Additional file 7: of Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai

Jingxin Zhang (737647)
John Hu (5944565)
Huifang Shen (1657891)
Yucheng Zhang (136327)
Dayuan Sun (3339438)
Xiaoming Pu (5944568)
Qiyun Yang (503880)
Qiurong Fan (5944571)
Birun Lin (381052)

November 2018

Genomic organization of effector gene clusters of the T3SS in Dickeya strains. The effector gene clu...

Additional file 11: of Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai

Jingxin Zhang (737647)
John Hu (5944565)
Huifang Shen (1657891)
Yucheng Zhang (136327)
Dayuan Sun (3339438)
Xiaoming Pu (5944568)
Qiyun Yang (503880)
Qiurong Fan (5944571)
Birun Lin (381052)

November 2018

Genetic differentiation and gene flow analysis of different D. fangzhongdai subpopulations. The Chin...

Draft Genome Sequences of 17 Isolates of the Plant Pathogenic Bacterium <em>Dickeya</em>

Pritchard, Leighton
Humphris, Sonia
Saddler, Gerry S.
Elphinstone, John G
Pirhonen, Minna
Toth, Ian K

January 2013

Dickeya (formerly Erwinia chrysanthemi) species cause diseases on a wide range of crops and ornament...

Additional file 1: Tables S1-S5. of Population genomics reveals additive and replacing horizontal gene transfers in the emerging pathogen Dickeya solani

Slimane Khayi (3291216)
Pauline Blin (641878)
Jacques Pédron (352958)
Teik-Min Chong (3291213)
Kok-Gan Chan (531824)
Mohieddine Moumni (3291210)
Valérie Hélias (169758)
Frédérique Van Gijsegem (3291219)
Denis Faure (169803)

October 2015

Table S1. Dickeya solani strains in this study. Table S2. Sequencing data and mappings on the Dsl 33...

Additional file 5: of Dickeya zeae strains isolated from rice, banana and clivia rot plants show great virulence differentials

Ming Hu (38573)
Jieling Li (1722136)
Ruiting Chen (5872040)
Wenjun Li (41954)
Luwen Feng (5872046)
Lei Shi (8144)
Yang Xue (166928)
Xiaoyin Feng (5872052)
Lianhui Zhang (548620)
Jianuan Zhou (679516)

October 2018

Primers used in this study for detection of zeamines biosynthesis genes. (DOC 54 kb

Draft Genome Sequences of 17 Isolates of the Plant Pathogenic Bacterium Dickeya

October 2016

Dickeya (formerly Erwinia chrysanthemi) species cause diseases on a wide range of crops and ornament...

Additional file 3: of Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates

Špela Alič (6200537)
Jacques Pédron (352958)
Tanja Dreo (65657)
Frédérique Gijsegem (6200540)

January 2019

Tables S2 and S3. Genes found in each of the JS5 and Nd14b genomic clades that are absent from the o...

Additional file 2: of Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates

Špela Alič (6200537)
Jacques Pédron (352958)
Tanja Dreo (65657)
Frédérique Gijsegem (6200540)

January 2019

Table S1. T5SS and T6SS effectors present in the different Dickeya fangzhongdai genomes. (DOCX 25 kb

Additional file 8: of Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai

Jingxin Zhang (737647)
John Hu (5944565)
Huifang Shen (1657891)
Yucheng Zhang (136327)
Dayuan Sun (3339438)
Xiaoming Pu (5944568)
Qiyun Yang (503880)
Qiurong Fan (5944571)
Birun Lin (381052)

November 2018

Genomic organization of vir clusters of the T4SS in Dickeya strains. The vir cluster of the T4SS in ...

Additional file 9: of Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai

Jingxin Zhang (737647)
John Hu (5944565)
Huifang Shen (1657891)
Yucheng Zhang (136327)
Dayuan Sun (3339438)
Xiaoming Pu (5944568)
Qiyun Yang (503880)
Qiurong Fan (5944571)
Birun Lin (381052)

November 2018

Synteny analysis of Dickeya strains based on sequences of the flagellar-type T3SS. Strains analyzed ...

Additional file 6: of Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai

Jingxin Zhang (737647)
John Hu (5944565)
Huifang Shen (1657891)
Yucheng Zhang (136327)
Dayuan Sun (3339438)
Xiaoming Pu (5944568)
Qiyun Yang (503880)
Qiurong Fan (5944571)
Birun Lin (381052)

November 2018

Genomic organization of hrp-type T3SS in Dickeya strains. The hrp-type T3SS in D. fangzhongdai PA1 i...

Additional file 5: of Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai

Jingxin Zhang (737647)
John Hu (5944565)
Huifang Shen (1657891)
Yucheng Zhang (136327)
Dayuan Sun (3339438)
Xiaoming Pu (5944568)
Qiyun Yang (503880)
Qiurong Fan (5944571)
Birun Lin (381052)

November 2018

Genomic organization of out-type T2SS in Dickeya strains. The out-type T2SS in D. fangzhongdai PA1 i...

Additional file 1: of Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai

Jingxin Zhang (737647)
John Hu (5944565)
Huifang Shen (1657891)
Yucheng Zhang (136327)
Dayuan Sun (3339438)
Xiaoming Pu (5944568)
Qiyun Yang (503880)
Qiurong Fan (5944571)
Birun Lin (381052)

November 2018

Phylogenetic analysis of Dickeya strains based on complete or draft genome sequences. Orthologous gr...

Additional file 10: of Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai

Jingxin Zhang (737647)
John Hu (5944565)
Huifang Shen (1657891)
Yucheng Zhang (136327)
Dayuan Sun (3339438)
Xiaoming Pu (5944568)
Qiyun Yang (503880)
Qiurong Fan (5944571)
Birun Lin (381052)

November 2018

Phylogenetic analysis of D. fangzhongdai, D. dadantii and D. solani strains based on the protein seq...

Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates

Alič, Špela
Pédron, Jacques
Dreo, Tanja
Van Gijsegem, Frédérique

January 2019

BackgroundThe Dickeya genus is part of the Pectobacteriaceae family that is included in the newly de...

Additional file 7: of Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai

Jingxin Zhang (737647)
John Hu (5944565)
Huifang Shen (1657891)
Yucheng Zhang (136327)
Dayuan Sun (3339438)
Xiaoming Pu (5944568)
Qiyun Yang (503880)
Qiurong Fan (5944571)
Birun Lin (381052)

November 2018

Genomic organization of effector gene clusters of the T3SS in Dickeya strains. The effector gene clu...

Additional file 11: of Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai

Jingxin Zhang (737647)
John Hu (5944565)
Huifang Shen (1657891)
Yucheng Zhang (136327)
Dayuan Sun (3339438)
Xiaoming Pu (5944568)
Qiyun Yang (503880)
Qiurong Fan (5944571)
Birun Lin (381052)

November 2018

Genetic differentiation and gene flow analysis of different D. fangzhongdai subpopulations. The Chin...

Draft Genome Sequences of 17 Isolates of the Plant Pathogenic Bacterium <em>Dickeya</em>

Pritchard, Leighton
Humphris, Sonia
Saddler, Gerry S.
Elphinstone, John G
Pirhonen, Minna
Toth, Ian K

January 2013

Dickeya (formerly Erwinia chrysanthemi) species cause diseases on a wide range of crops and ornament...

Additional file 1: Tables S1-S5. of Population genomics reveals additive and replacing horizontal gene transfers in the emerging pathogen Dickeya solani

Slimane Khayi (3291216)
Pauline Blin (641878)
Jacques Pédron (352958)
Teik-Min Chong (3291213)
Kok-Gan Chan (531824)
Mohieddine Moumni (3291210)
Valérie Hélias (169758)
Frédérique Van Gijsegem (3291219)
Denis Faure (169803)

October 2015

Table S1. Dickeya solani strains in this study. Table S2. Sequencing data and mappings on the Dsl 33...

Additional file 5: of Dickeya zeae strains isolated from rice, banana and clivia rot plants show great virulence differentials

Ming Hu (38573)
Jieling Li (1722136)
Ruiting Chen (5872040)
Wenjun Li (41954)
Luwen Feng (5872046)
Lei Shi (8144)
Yang Xue (166928)
Xiaoyin Feng (5872052)
Lianhui Zhang (548620)
Jianuan Zhou (679516)

October 2018

Primers used in this study for detection of zeamines biosynthesis genes. (DOC 54 kb

Draft Genome Sequences of 17 Isolates of the Plant Pathogenic Bacterium Dickeya

October 2016

Dickeya (formerly Erwinia chrysanthemi) species cause diseases on a wide range of crops and ornament...

Additional file 4: of Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates

Abstract

Extracted data

Additional file 4: of Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates

Abstract

Extracted data

Related items

Related items