Table S1. Primers and probes used in qPCR. Table S2. A. Numbers of gene orthologues with significantly (P<0.01) different abundances between groups. Down and up indicate whether the genes are under- or over-represented respectively in one group compared to the other. B. Gene orthologues with significantly (P<0.01) different abundances between groups. Table lists for all significant gene orthologues, the KEGG reference and annotation, and the the Benjamini-Hochberg adjusted p-value (padj). Table S3. Resistance genes found in the metagenomic dataset that had a significantly higher abundance (p < 0.05) in one of the intervention groups compared to the control. (DOCX 26 kb
Figure S2. The 25 most abundant families genera. The overall 25 most abundant genera in percent. Eac...
Table S1. Sample concentration and number of reads after sequencing. “Reads” is the number of reads ...
Table S1. Overview of tet-resistance genes surveyed in the guts of G. mellonella larvae. (PDF 21 kb
Figure S3. Bar graph showing the taxonomic composition at the genus level in the control and interve...
Figure S1. Experiment timeline. The upper part of the figure indicates the time points at which spec...
Figure S4. Heatmap of the ten operational taxonomic units identified through Canonical Analysis of P...
Figure S2. Spatial distribution of the pens where the calves were housed. The colors indicate the lo...
Figure S5. Boxplots shoring the Shannon diversity of each group of calves at each time point. The bo...
Relative abundance (%) of 20 groups of functional genes representing 204 selected genes (number of a...
Table S2. Commonly used target genes for qPCR-based studies of resistance genes in the environments ...
Table S1. List of gene-specific primers used in qPCR. Table S2. Principal component analysis of micr...
Figure S1. Predictive ranking power of randomly selected subsets of resistance genes on the full dat...
Figure S1. UPGMA clustering of the bacterial profiles by 454 pyrosequencing. Figure S2. UPGMA cluste...
Abstract Background Antibiotic therapy is commonly used in animal agriculture. Antibiotics excreted ...
Heat map showing the most abundant antibiotic resistance genes across environments. Figure S2. Relat...
Figure S2. The 25 most abundant families genera. The overall 25 most abundant genera in percent. Eac...
Table S1. Sample concentration and number of reads after sequencing. “Reads” is the number of reads ...
Table S1. Overview of tet-resistance genes surveyed in the guts of G. mellonella larvae. (PDF 21 kb
Figure S3. Bar graph showing the taxonomic composition at the genus level in the control and interve...
Figure S1. Experiment timeline. The upper part of the figure indicates the time points at which spec...
Figure S4. Heatmap of the ten operational taxonomic units identified through Canonical Analysis of P...
Figure S2. Spatial distribution of the pens where the calves were housed. The colors indicate the lo...
Figure S5. Boxplots shoring the Shannon diversity of each group of calves at each time point. The bo...
Relative abundance (%) of 20 groups of functional genes representing 204 selected genes (number of a...
Table S2. Commonly used target genes for qPCR-based studies of resistance genes in the environments ...
Table S1. List of gene-specific primers used in qPCR. Table S2. Principal component analysis of micr...
Figure S1. Predictive ranking power of randomly selected subsets of resistance genes on the full dat...
Figure S1. UPGMA clustering of the bacterial profiles by 454 pyrosequencing. Figure S2. UPGMA cluste...
Abstract Background Antibiotic therapy is commonly used in animal agriculture. Antibiotics excreted ...
Heat map showing the most abundant antibiotic resistance genes across environments. Figure S2. Relat...
Figure S2. The 25 most abundant families genera. The overall 25 most abundant genera in percent. Eac...
Table S1. Sample concentration and number of reads after sequencing. “Reads” is the number of reads ...
Table S1. Overview of tet-resistance genes surveyed in the guts of G. mellonella larvae. (PDF 21 kb