Table S3. Associations between DNA methylation and splicing as observed in the iPS (a-g) and endoderm (h-n) single cells. Each table contains significant associations per sequence context per tissue. The cassette exon, P value (nominal and after multiple testing correction), effect size and effect direction are shown. a. C1 iPS. b. I1 ‘5 iPS. c. I1 ‘3 iPS. d. A iPS. e. I2 ‘5 iPS. f. I2 ‘3 iPS. g. C2 iPS. h. C1 endoderm. i. I1 ‘5 endoderm. j. I1 ‘3 endoderm. k. A endoderm. l. I2 ‘5 endoderm S. m. I2 ‘3 iPS. n. C2 endoderm. (XLSX 163 kb
Table S1. Relative methylation levels of mgmiRs in human HNSCC cell lines and normal head and neck c...
Table S1. No adverse effect of methylated AluI-linker on MeDIP enrichment. Table S2. Evidence of a d...
Figure S2. Comparison of the methods MEDIPS_normal and MEDIPS. Spearman correlation coefficient (SCC...
Table S2. Splicing rates per cell and tissue type. a. iPS cells, b. endoderm, c. mouse ES cells. (XL...
Table S1. Sample meta-data and quality control characteristics per cell. a. iPS cells and endoderm, ...
Table S9. AUC, effect and sign of all features when predicting splicing categories switching from iP...
Supplementary Results & Figure S1-S11. Supplementary results on the deep modeling of the splicing st...
Box plot representation of DNA methylation alterations of analysed genes in biopsies and macrodissec...
DNA methylation mapping of BMP4 and IGFBP3 tumor suppressor genes in the three hepatoma cell lines. ...
Additional file 1: Figure S1. General statistics and quality control metrics for Dnmt1-/-, Dnmt3a-/-...
DNA methylation changes per chromosome in histone H1-depleted ES cells. Figure S2. Hypomethylation i...
Correlation of methylation level at different gene features with transcript and protein expression l...
Figure S4. Comparison of the expression status of the ESC-specific hypomethylated genes between the ...
Figure S3. Difference in specific cytosine methylation between S2:208 RED and S2:208 ORN LwV tissues...
Representative results of correlation analysis. Significant inverse correlations between DNA methyla...
Table S1. Relative methylation levels of mgmiRs in human HNSCC cell lines and normal head and neck c...
Table S1. No adverse effect of methylated AluI-linker on MeDIP enrichment. Table S2. Evidence of a d...
Figure S2. Comparison of the methods MEDIPS_normal and MEDIPS. Spearman correlation coefficient (SCC...
Table S2. Splicing rates per cell and tissue type. a. iPS cells, b. endoderm, c. mouse ES cells. (XL...
Table S1. Sample meta-data and quality control characteristics per cell. a. iPS cells and endoderm, ...
Table S9. AUC, effect and sign of all features when predicting splicing categories switching from iP...
Supplementary Results & Figure S1-S11. Supplementary results on the deep modeling of the splicing st...
Box plot representation of DNA methylation alterations of analysed genes in biopsies and macrodissec...
DNA methylation mapping of BMP4 and IGFBP3 tumor suppressor genes in the three hepatoma cell lines. ...
Additional file 1: Figure S1. General statistics and quality control metrics for Dnmt1-/-, Dnmt3a-/-...
DNA methylation changes per chromosome in histone H1-depleted ES cells. Figure S2. Hypomethylation i...
Correlation of methylation level at different gene features with transcript and protein expression l...
Figure S4. Comparison of the expression status of the ESC-specific hypomethylated genes between the ...
Figure S3. Difference in specific cytosine methylation between S2:208 RED and S2:208 ORN LwV tissues...
Representative results of correlation analysis. Significant inverse correlations between DNA methyla...
Table S1. Relative methylation levels of mgmiRs in human HNSCC cell lines and normal head and neck c...
Table S1. No adverse effect of methylated AluI-linker on MeDIP enrichment. Table S2. Evidence of a d...
Figure S2. Comparison of the methods MEDIPS_normal and MEDIPS. Spearman correlation coefficient (SCC...