(A) Venn diagram showing number of common and unique peaks from the NaCl-treated Sko1-WT and Sko1-MT ChIP-seq analysis. Peaks identified in both ChIP-seq replicates (overlapping peak sets) were examined. (B) Distribution of ChIP-seq peaks from NaCl-treated Sko1-WT and Sko1-MT samples across indicated gene features, as in Fig 4B. (C) Percentage of peaks, within indicated peak sets, that contain the major Sko1 consensus motif, ATGACGT, or a less-specific motif, TKACG, where K is G or T. (D) Status of “WT & MT” and “MT only” Sko1 binding sites from ChIP-seq analysis of untreated samples in the NaCl-treated set.</p
<p>(A) 4,428 SNPs identified by resequencing at as many sites. Y-axis indicates the number of SNPs i...
Transcription factors (TFs) are key regulators of gene expression whose failure has been implicated ...
Background: Motif enrichment analysis of transcription factor ChIP-seq data can help identify transc...
(A) Number of binding sites (peaks) identified from Replicate 1 of ChIP-seq analysis of SKO1-WT.HA a...
(A) Venn diagram showing number of common and unique peaks from the untreated Sko1-WT and Sko1-MT Ch...
(A) Boxplots comparing mean read concentrations (log2 normalized ChIP read counts) for the 630 conse...
<p>(A) Validating the NKX2-1 antibody for ChIP: ChIP-PCR identifies the known NKX2-1 binding site in...
Background: Chromatin immunoprecipitation (ChIP) coupled to high-throughput...
<p>(A) Venn diagram of annotated genes corresponding to peaks identified by ChIP-seq with indicated ...
ChIP-Seq is a technology for detecting in vivo transcription factor binding sites or histone modific...
ChIP-Seq is a technology for detecting in vivo transcription factor binding sites or histone modific...
<p>The tracks are (from top): FNR ChIP-seq −O<sub>2</sub> (blue) with peaks upstream of a subset of ...
Binding of transcription factors on specific sites of DNA is central to the regulation of gene expre...
<p><b>(A)</b> Examples of σ<sup>54</sup> and RNAP (β) binding. Schematics depict the local genomic e...
<p>(A-B) Peaks lacking MDAm are highly concentrated within 1 kb of the TSS in the ChIP-seq data sets...
<p>(A) 4,428 SNPs identified by resequencing at as many sites. Y-axis indicates the number of SNPs i...
Transcription factors (TFs) are key regulators of gene expression whose failure has been implicated ...
Background: Motif enrichment analysis of transcription factor ChIP-seq data can help identify transc...
(A) Number of binding sites (peaks) identified from Replicate 1 of ChIP-seq analysis of SKO1-WT.HA a...
(A) Venn diagram showing number of common and unique peaks from the untreated Sko1-WT and Sko1-MT Ch...
(A) Boxplots comparing mean read concentrations (log2 normalized ChIP read counts) for the 630 conse...
<p>(A) Validating the NKX2-1 antibody for ChIP: ChIP-PCR identifies the known NKX2-1 binding site in...
Background: Chromatin immunoprecipitation (ChIP) coupled to high-throughput...
<p>(A) Venn diagram of annotated genes corresponding to peaks identified by ChIP-seq with indicated ...
ChIP-Seq is a technology for detecting in vivo transcription factor binding sites or histone modific...
ChIP-Seq is a technology for detecting in vivo transcription factor binding sites or histone modific...
<p>The tracks are (from top): FNR ChIP-seq −O<sub>2</sub> (blue) with peaks upstream of a subset of ...
Binding of transcription factors on specific sites of DNA is central to the regulation of gene expre...
<p><b>(A)</b> Examples of σ<sup>54</sup> and RNAP (β) binding. Schematics depict the local genomic e...
<p>(A-B) Peaks lacking MDAm are highly concentrated within 1 kb of the TSS in the ChIP-seq data sets...
<p>(A) 4,428 SNPs identified by resequencing at as many sites. Y-axis indicates the number of SNPs i...
Transcription factors (TFs) are key regulators of gene expression whose failure has been implicated ...
Background: Motif enrichment analysis of transcription factor ChIP-seq data can help identify transc...