(A) Venn diagram showing number of common and unique peaks from the untreated Sko1-WT and Sko1-MT ChIP-seq analyses. Peaks identified in both ChIP-seq replicates (i.e. overlapping peak sets) were examined. (B) Distribution of ChIP-seq peaks from untreated Sko1-WT and Sko1-MT samples across indicated gene features. “Imm. Dnstrm.” refers to the 1000 bases immediately downstream of the 3ʹ UTR-encoding sequence. “WT & MT” refers to peaks shared between the Sko1-WT and Sko1-MT sets, whereas “WT only” and “MT only” refer to peaks that are unique to the respective peak sets. (C) Distribution of aggregate peak numbers around the nearest transcriptional start site (TSS) for “WT & MT” and “MT only” peak sets. (D) Percentage of peaks, within indicated...
<p><b>(A)</b> Examples of σ<sup>54</sup> and RNAP (β) binding. Schematics depict the local genomic e...
Although ChIP-seq has become a routine experimental approach for quantitatively characterizing the g...
Chromatin immunoprecipitation (ChIP) followed by high throughput sequencing (ChIP-seq) is rapidly be...
(A) Venn diagram showing number of common and unique peaks from the NaCl-treated Sko1-WT and Sko1-MT...
(A) Number of binding sites (peaks) identified from Replicate 1 of ChIP-seq analysis of SKO1-WT.HA a...
<p>(A) Genome distribution of So-enriched regions (peaks) with respect to annotated transcription st...
Background: Chromatin immunoprecipitation (ChIP) coupled to high-throughput...
<p>(A) Venn diagram of annotated genes corresponding to peaks identified by ChIP-seq with indicated ...
(A) Boxplots comparing mean read concentrations (log2 normalized ChIP read counts) for the 630 conse...
<p>(A-B) Peaks lacking MDAm are highly concentrated within 1 kb of the TSS in the ChIP-seq data sets...
Binding of transcription factors on specific sites of DNA is central to the regulation of gene expre...
ChIP-Seq is a technology for detecting in vivo transcription factor binding sites or histone modific...
ChIP-Seq is a technology for detecting in vivo transcription factor binding sites or histone modific...
Boxplots show the distribution of median ChIP-seq, GRO-seq and MNase-seq signals within 20 bp window...
*co-correspondence authors We have developed a novel approach called ChIPModule to systematically di...
<p><b>(A)</b> Examples of σ<sup>54</sup> and RNAP (β) binding. Schematics depict the local genomic e...
Although ChIP-seq has become a routine experimental approach for quantitatively characterizing the g...
Chromatin immunoprecipitation (ChIP) followed by high throughput sequencing (ChIP-seq) is rapidly be...
(A) Venn diagram showing number of common and unique peaks from the NaCl-treated Sko1-WT and Sko1-MT...
(A) Number of binding sites (peaks) identified from Replicate 1 of ChIP-seq analysis of SKO1-WT.HA a...
<p>(A) Genome distribution of So-enriched regions (peaks) with respect to annotated transcription st...
Background: Chromatin immunoprecipitation (ChIP) coupled to high-throughput...
<p>(A) Venn diagram of annotated genes corresponding to peaks identified by ChIP-seq with indicated ...
(A) Boxplots comparing mean read concentrations (log2 normalized ChIP read counts) for the 630 conse...
<p>(A-B) Peaks lacking MDAm are highly concentrated within 1 kb of the TSS in the ChIP-seq data sets...
Binding of transcription factors on specific sites of DNA is central to the regulation of gene expre...
ChIP-Seq is a technology for detecting in vivo transcription factor binding sites or histone modific...
ChIP-Seq is a technology for detecting in vivo transcription factor binding sites or histone modific...
Boxplots show the distribution of median ChIP-seq, GRO-seq and MNase-seq signals within 20 bp window...
*co-correspondence authors We have developed a novel approach called ChIPModule to systematically di...
<p><b>(A)</b> Examples of σ<sup>54</sup> and RNAP (β) binding. Schematics depict the local genomic e...
Although ChIP-seq has become a routine experimental approach for quantitatively characterizing the g...
Chromatin immunoprecipitation (ChIP) followed by high throughput sequencing (ChIP-seq) is rapidly be...