Additional file 8: of The neoepitope landscape of breast cancer: implications for immunotherapy

Figure S6. Correlation of number of potential binding neoepitopes with number of expressed (FPKM≥2) neoepitopes. The number of potential binding neoepitopes (IEDB score ≤ 500) are highly correlated with the number of expressed neoepitopes (FPKM≥2) for all three subtypes of breast cancer. In all the plots a linear regression model is used to fit the data; the fitted line is shown in red and 95% CIs are shown in grey (PDF 255 kb