Figure S2. DNA size distributions during TIPseq. a. An Agilent TapeStation image of two samples of purified vectorette PCR DNA is shown with amplicons averaging 1-3 kb. The protocol does not require running samples on TapeStation after vectorette PCR, but this image is included to illustrate the size range. b. The second TapeStation image shows the samples after DNA shearing. The average size distribution for the sheared DNA should be approximately 300 bp. c. As a final quality control, samples should be run on the TapeStation after library prep is completed. This image shows the increase in size from the Illumina adapters and an average library size around 400 bp. (PDF 952 kb
Figure S6. UDiTaS characterization and comparison to AMP-Seq with plasmid standards. Plasmids contai...
Description of Datasets. xlsx file with description of experiments: panel used for sequencing, inter...
<p>(A) A density plot of the expected distribution of fragment lengths, with peaks at 124 and 142 bp...
Figure S1. Vectorette PCR amplicons quality control. a. Electrophoresis of vectorette PCR amplicons....
Normalization of tagmentation activity based on pre-PCR insertion size distribution. Activity is nor...
Library metrics. A) Gel image showing size distributions of template DNA for library preparation pre...
Depth of unique coverage according to the size of the target regions (x-axis). Target regions adjace...
Copy number analysis from the massive parallel sequencing data using 1-cell, 5-cell, 10-cell and bat...
Figure S1. Pulsed field gel electrophoresis image of B73 high molecular weight DNA after extraction ...
Figure S2. Length distribution of mapped reads. Length distributions of reads mapping to the whole g...
Primer pairs used in PCR. Figure S1. Circular map of T-DNA construct. Figure S2. PCR confirmation of...
Figure S1. Schematic overview of the computational pipeline to identify somatic mutations in NG-TAS ...
Figure S5. Genome mapping rates for UDiTaS. Individual reads map to the expected genome site with hi...
Figure S3. Expected yield and on-target fold-enrichment. Dashed lines indicate the number of down-sa...
Figure S4. BlandâAltman plot (MA plot) of translatome (IP samples) and transcriptome (input sample...
Figure S6. UDiTaS characterization and comparison to AMP-Seq with plasmid standards. Plasmids contai...
Description of Datasets. xlsx file with description of experiments: panel used for sequencing, inter...
<p>(A) A density plot of the expected distribution of fragment lengths, with peaks at 124 and 142 bp...
Figure S1. Vectorette PCR amplicons quality control. a. Electrophoresis of vectorette PCR amplicons....
Normalization of tagmentation activity based on pre-PCR insertion size distribution. Activity is nor...
Library metrics. A) Gel image showing size distributions of template DNA for library preparation pre...
Depth of unique coverage according to the size of the target regions (x-axis). Target regions adjace...
Copy number analysis from the massive parallel sequencing data using 1-cell, 5-cell, 10-cell and bat...
Figure S1. Pulsed field gel electrophoresis image of B73 high molecular weight DNA after extraction ...
Figure S2. Length distribution of mapped reads. Length distributions of reads mapping to the whole g...
Primer pairs used in PCR. Figure S1. Circular map of T-DNA construct. Figure S2. PCR confirmation of...
Figure S1. Schematic overview of the computational pipeline to identify somatic mutations in NG-TAS ...
Figure S5. Genome mapping rates for UDiTaS. Individual reads map to the expected genome site with hi...
Figure S3. Expected yield and on-target fold-enrichment. Dashed lines indicate the number of down-sa...
Figure S4. BlandâAltman plot (MA plot) of translatome (IP samples) and transcriptome (input sample...
Figure S6. UDiTaS characterization and comparison to AMP-Seq with plasmid standards. Plasmids contai...
Description of Datasets. xlsx file with description of experiments: panel used for sequencing, inter...
<p>(A) A density plot of the expected distribution of fragment lengths, with peaks at 124 and 142 bp...