Figure S1. Assessment of reads by FastQC before quality control. a) Quality of raw-reads per base. The central red line is the median base quality, the yellow box represents the interquartile range (25â75%), the upper and lower whiskers represent the 10 and 90% points, respectively, and the blue line represents the mean base quality. b) Distribution of raw-reads per base. c) The mean sequence quality scores over all reads. d) Distribution of sequence lengths over all sequences. (PDF 24825 kb
Figure S1. PCA of RPKM values for 6745 paired transcripts (identified in both genome and transcripto...
Figure S1. Preprocessing of reads and transcriptome length distribution. (a) Percentage of preproces...
Limma DE gene table of the spots with foreground different to background. Table S2. EdgeR DE gene ta...
Figure S2. Assessment of reads using FastQC after quality control. a) Quality of reads per base afte...
Table S2. Summary of database matches (specific values) for C. gigantea unigenes. (DOCX 15 kb
Figure S10. Alignment of the conserved RxR and DDxxD motifs and motifs variation among 121 TPS seque...
Figure S9. Conserved motifs in LRR-RLK domain from C. gigantea transcriptome and their consensus seq...
Table S1. Summary of assembled contigs, scaffolds and unigenes properties for the C. gigantea unigen...
Table S3. Database matches (full results) for C. gigantea unigenes. (XLSX 1763 kb
Figure S12. Test of differential gene expresssion among selected genes from three gene families (USP...
Figure S11. Gel electrophoresis of 39 primers for real-time PCR with cDNA as template (a and b) and ...
Table S8. Characteristics of the transcriptome assemblies from related conifer species and re-analys...
Table S7. Functional enrichment analysis of the specific gene families from C. gigantea. The full li...
Figure S8. Multiple sequence alignment (MSA) of the USPA-like domains of the putative USPA protein. ...
Figure S6. Metabolic pathway of the Terpenoid bakcone biosynthesis for the unigenes identified in C....
Figure S1. PCA of RPKM values for 6745 paired transcripts (identified in both genome and transcripto...
Figure S1. Preprocessing of reads and transcriptome length distribution. (a) Percentage of preproces...
Limma DE gene table of the spots with foreground different to background. Table S2. EdgeR DE gene ta...
Figure S2. Assessment of reads using FastQC after quality control. a) Quality of reads per base afte...
Table S2. Summary of database matches (specific values) for C. gigantea unigenes. (DOCX 15 kb
Figure S10. Alignment of the conserved RxR and DDxxD motifs and motifs variation among 121 TPS seque...
Figure S9. Conserved motifs in LRR-RLK domain from C. gigantea transcriptome and their consensus seq...
Table S1. Summary of assembled contigs, scaffolds and unigenes properties for the C. gigantea unigen...
Table S3. Database matches (full results) for C. gigantea unigenes. (XLSX 1763 kb
Figure S12. Test of differential gene expresssion among selected genes from three gene families (USP...
Figure S11. Gel electrophoresis of 39 primers for real-time PCR with cDNA as template (a and b) and ...
Table S8. Characteristics of the transcriptome assemblies from related conifer species and re-analys...
Table S7. Functional enrichment analysis of the specific gene families from C. gigantea. The full li...
Figure S8. Multiple sequence alignment (MSA) of the USPA-like domains of the putative USPA protein. ...
Figure S6. Metabolic pathway of the Terpenoid bakcone biosynthesis for the unigenes identified in C....
Figure S1. PCA of RPKM values for 6745 paired transcripts (identified in both genome and transcripto...
Figure S1. Preprocessing of reads and transcriptome length distribution. (a) Percentage of preproces...
Limma DE gene table of the spots with foreground different to background. Table S2. EdgeR DE gene ta...